Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1592 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGGATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCGTACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 975 52.21 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27142230 27143204 + CmPI595203_06g015920.1 Cmu06g1592 419252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1592 324 MobiDBLite consensus disorder prediction 1 26 - -
Cmu06g1592 324 MobiDBLite consensus disorder prediction 81 131 - -
Cmu06g1592 324 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu06g1592 324 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu06g1592 324 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu06g1592 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 203 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1592 Cmu-Chr6:27142230 Cmu10g1633 Cmu-Chr10:15834123 9.40E-28 dispersed
Cmu04g1193 Cmu-Chr4:26504879 Cmu06g1592 Cmu-Chr6:27142230 3.60E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6427 PF02701 zf-Dof 4.40E-33 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1592 - - - 0.0