Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1601 ATGGAAGTTAATACCTACAATGATCCATTACACAAAATTCTCTTTAAATGGGAATGTTACTCGCCTCGACAGCAAAAGATTGCACTCTTAGCACTTCTGATCTTTACAGCTTTCTATTCAACTCGGGCATACGATCCATTGGATCCAAATGGAAACCTAACAATCAAATGGGATGTAGTCTCCTGGACGCCAGACGGATATGTAGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCGTGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGAGCTCAGACAACGGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTCCCTCACTGTTGCAAGAAAAGCCCAGTAGTTGTTGATTTGCTTCCTGGTGTTCCTTACAATCAACAATTCTCCAATTGCTGCAAGGGTGGAGTATTGGCATCCTGGGGACAGGATCCAGCAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTAAAATTGCCAAAGAACTTCACTTTGCTCGGTCCAGGACCAGGATACACATGTGGACCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCCAAGAACCCAACTTGCTGTGTATCACTCTCAACTTTCTACAATGATACAATCACTTCTTGCCCAACGTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTACTGCACAAGGATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTAGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGCGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGTTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTCATGAAGAAGGACAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCGCCAGAATCATACCCATTTCTACCCAACTCTGCGCCTGGAGGCTCCGGTGCAGTTACCAAATTAACCACCTCCTTGCTTTTGATACTCTGGTTTTTGTGGTGA 1371 43.91 MEVNTYNDPLHKILFKWECYSPRQQKIALLALLIFTAFYSTRAYDPLDPNGNLTIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKSPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSGAVTKLTTSLLLILWFLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27224357 27226742 + CmPI595203_06g016010.1 Cmu06g1601 419261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1601 456 PIRSF COBRA 15 456 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu06g1601 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu06g1601 456 PANTHER PROTEIN COBRA 32 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1523 Cmu-Chr5:23392726 Cmu06g1601 Cmu-Chr6:27224357 5.60E-35 dispersed
Cmu06g1601 Cmu-Chr6:27224357 Cmu07g1571 Cmu-Chr7:30880123 1.20E-222 dispersed
Cmu06g1601 Cmu-Chr6:27224357 Cmu06g1602 Cmu-Chr6:27226793 3.30E-188 tandem
Cmu04g1201 Cmu-Chr4:26570437 Cmu06g1601 Cmu-Chr6:27224357 3.40E-159 wgd
Cmu05g1053 Cmu-Chr5:9814573 Cmu06g1601 Cmu-Chr6:27224357 5.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1601 - - - 0.0