Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1602 ATGAGGTCTCGGCGTTTCGCTTCCACCGGATCCGTCGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCCGGCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTTAGACTTCCTAAAAACTTCACGCTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTGGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCAACAATGCACCCTTGGTTCAGTGCACCAGCCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTTAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCACCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCATTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAAGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAATCTGCAGTTTCTCCCTTGAATTATGA 1332 44.44 MRSRRFASTGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPICSFSLEL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27226793 27230136 - CmPI595203_06g016020.1 Cmu06g1602 419262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1602 443 PIRSF COBRA 9 442 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu06g1602 443 PANTHER PROTEIN COBRA 25 436 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cmu06g1602 443 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1053 Cmu-Chr5:9814573 Cmu06g1602 Cmu-Chr6:27226793 1.70E-138 dispersed
Cmu06g1602 Cmu-Chr6:27226793 Cmu07g1570 Cmu-Chr7:30876701 1.90E-217 dispersed
Cmu06g1601 Cmu-Chr6:27224357 Cmu06g1602 Cmu-Chr6:27226793 3.30E-188 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1602 - - - 0.0