Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1605 ATGGAAATGGCTGTTTGCAATGCAAAAGTTGGTTTGGAAAAGAAAAGGAAAAGAAAGCAGAGAAGGAGGGGTAACACCACTAGTGGCGATAACAGAGGTTGCAATCCTGGTGAAGATAATGCTCCAACAGAAAATAATGCTGCTCAAGAATCTCCAAATGAAATGTGCTTGAACATGGACTCAGAAATGGGGCAATCTCATTTAGAAGTAAATCTGCTAGGAGAAAAGAATGAGGAGAAGCACGATGATTTACAGTGTGGAGAAGCTACTGGAATATCTGACTTGACCTTCTTGAACGTTAAAGTTCTTAAAGAAGATGATGAGACATCTACTTCCCCAAATGTAGACTTTTGTTCGGCGAATGGAAAGGAAAATTCTTCAGTTCCCAAGAATCCAGATGGGAAAGCTACTGATATGGTTAAAAGACATGATGAACATACAGAAACCATAGATCAGTCAACTCCTTCAAGCCATGTTGAACCCCAAAGGATAAGGAAAAAAAGGCGGCGGCGTAGAAAGGGAAGGTCGTTAGGACCCCCTAAAGAAAGTTTGGAAACCAATATAGGGGACAAAAAGAAAGTTTCTCTATCGAACCATCCTCATGAAGAGGAGACAAATAGCCACCTTAAAAATTTTGTAATAGAAGAGGTTATGAATGGTGTTCAGTTGGAAGAATCAGTTGGCTGCCCAATTAGTGAAAAAACAGAGTTGTTGTCTGCAATGACAAAGGAAAGCTCTATGGTTATTACAGATCCTCAGAAATCCAAGGATTTTGAAAATGCTACCATGGTTAAAAAAGATGATGACTGTTCAGAGATTAAGTATTGCTTGGCTCAATCAAACAGTTATGATACCCATGACAAAACAAAAAAAGAGAGGAAAAAAGGTGGAAGAAGGAGAAAGTTTGCAGATACCTTTGAAGAAAGTTTGAATTCTGATGTGGAAGACACTAAGAAAGATGCTGCATTCAACCGTTTAAATGAAGAGGGTGCAATTAGTTTGCATGAACATTCTACCACCACCAAGATAGTAAAAGATGTTTTGGTGGAAGAAGTGTCAGCCAACTGCTCTGTGGGTGTACATACATCAGATGTCAAGGAGAGAGCGGAAACCATAAAGAAAAATGTTCCTCATTCGTTGGCTCGTGATGCGGCAAATGATAACATCAGTGCAACTGATGGATACACTCCAGATTTTGTAATATCACGTAAAGCAGTGTTTAAGAGGCCTTTCTGTGACGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCAAGAACCTGGAAGAACCTGAACATGTTAGTTAAGCTTCTTATGGGAGATTCCAGACACAAGCTACTTTTTTGCTGGGATCAATCACACTGTACAACTACAAGGTTCACCACTATCGAGAATGATAGGAAGCCCCTTGTTTTGAAGGAATTGAAAAAAATATGGGAAAATTTGGAACCGAATCTTCCATGGAAAAAGGGGCAGTTCGATGCGTCAAATACTTTATTGTTAGATGATTCCCCATACAAGGCCTTGCGCAATCCAGCTAATACTGCAGTATTTCCCACTTCATATCGGTACAAGGACACTGATGATACATCATTAGGACCTGGTGGTGATCTTCGCACTTATTTGGAGGGTGTATATACGGCAGAAAATGTTCAAAAATATGTTGAACAGAATCCATTTGGTCAAAAACCCATATCTGAATCTAGTCCATCTTGGAAATTCTACCGATTCCCACATGCTGATGATTAG 1764 39.57 MEMAVCNAKVGLEKKRKRKQRRRGNTTSGDNRGCNPGEDNAPTENNAAQESPNEMCLNMDSEMGQSHLEVNLLGEKNEEKHDDLQCGEATGISDLTFLNVKVLKEDDETSTSPNVDFCSANGKENSSVPKNPDGKATDMVKRHDEHTETIDQSTPSSHVEPQRIRKKRRRRRKGRSLGPPKESLETNIGDKKKVSLSNHPHEEETNSHLKNFVIEEVMNGVQLEESVGCPISEKTELLSAMTKESSMVITDPQKSKDFENATMVKKDDDCSEIKYCLAQSNSYDTHDKTKKERKKGGRRRKFADTFEESLNSDVEDTKKDAAFNRLNEEGAISLHEHSTTTKIVKDVLVEEVSANCSVGVHTSDVKERAETIKKNVPHSLARDAANDNISATDGYTPDFVISRKAVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVKLLMGDSRHKLLFCWDQSHCTTTRFTTIENDRKPLVLKELKKIWENLEPNLPWKKGQFDASNTLLLDDSPYKALRNPANTAVFPTSYRYKDTDDTSLGPGGDLRTYLEGVYTAENVQKYVEQNPFGQKPISESSPSWKFYRFPHADD 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27273586 27277453 + CmPI595203_06g016050.1 Cmu06g1605 419265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1605 587 MobiDBLite consensus disorder prediction 185 207 - -
Cmu06g1605 587 Pfam NLI interacting factor-like phosphatase 405 556 IPR004274 -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 106 207 - -
Cmu06g1605 587 SUPERFAMILY HAD-like 402 560 IPR036412 -
Cmu06g1605 587 Gene3D - 360 567 IPR023214 -
Cmu06g1605 587 PANTHER DULLARD PROTEIN PHOSPHATASE 154 566 IPR050365 GO:0004721(PANTHER)
Cmu06g1605 587 ProSiteProfiles FCP1 homology domain profile. 365 550 IPR004274 -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 162 176 - -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 112 132 - -
Cmu06g1605 587 SMART forpap2 360 534 IPR004274 -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 27 50 - -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 1 50 - -
Cmu06g1605 587 MobiDBLite consensus disorder prediction 135 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1605 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1605 Cmu-Chr6:27273586 Cmu07g1623 Cmu-Chr7:31452869 3.00E-72 dispersed
Cmu04g1209 Cmu-Chr4:26627358 Cmu06g1605 Cmu-Chr6:27273586 9.30E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010718 0 2 0 0 0 1 2 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 1 1 1 0 1 3 5 0 32