Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1648 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGTTACAAAGCCACTTTCCTGATGCCTCATTCATGGTTTTCAACTTCAGAGAAGGTGGCAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTTTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTAAGAGTTTTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCGACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACACGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTTGTTAGATCAAACATAATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGAGCAGTATCCCAAGGACTTCAGAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTCGAAGAGATCTTCAGTAGTGTAATTGATGGGCAGGAAGCAAAGGGGTCCAGTGATCCTCAAGTAGTCAATCATATAAACCGTAAAGAAGATTGGAAGGAGGACTTCGATCCTCCTGCATTCCAGGATTGTGACGATGGAAATCTTAAGCATGATAAGAAATCAGATTTTGATGCAGTGAAGGACATTACTGTGGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTTTTGGTTGCTGCTAATGTCCCGACTCATGCGAAAATCCAGGGGTTGGTGGATGATGCATACGAGAAATGTGAAGGTATGGAAGAAAAGGATGATGGAAGAGATACTACACCTGAGAAATTGGAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCTGATGGCTCTAGACAAAAATCAGAAAAATTGCAAACACCGATTCCCAAGAAACAGCCTATTTCAAGTGGAAAACCGACCGCTGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCGAAGCCAAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCCTATATGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCGAAGGATGTAAATGCAAATTCCAAAACGAAGGCTGCTGCCACTACAGATTCTCTGGTTGCTACAGATGTTTTTACTGAACGAAAAAACTATGAAGTGGATTCTGTGAGGCCTTCACACTCCGCCCCTGGGAACCTCATGCTTGGCCCATCATCTCCAGTTGAGTCAATTGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACATAGTGATGCACAACTTGGAGTACCACTTCCCCCCTTGCCCACAAAGCCTCCATCTCCATATTTACCATCACCCCGCCAGGCAAATGAAATACCTCCTCCACCTCCTCCACCTCCTCCACCACCCACTTCATTTCATCATATAGCTACAAGGTCCTCTGCTCTACCACTTTCCGCGTCTTTAGCACCACCATTCATAGTTAACTCACCAAAGGCAGTGAATACCCCTGCCCCTCCCCCTCCCCCTCCATCTAGTAGGCAGAATAGTGTTTTGCCCCATTCTTCAACACAACCATCATGGGAGCAAATATATTCTTCCGTTTCTACTGGAACAGTGACTGATTCTATACCTCCTCCACCCCCACCTTCCTCTGTGGGCATGCCATCTACATTAAAGAATATTGTAAGTACTTCTCCTGTACCTGTTTTGTCACCTTTTTCAGCCCTTCTTGCCTCATCACATAAAGGGATATCACTACCCCCACCCCCACCCCCACCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCACCTTCTATGAAACATGAAGCACCTGTTCCACCACCTCCTCCACCCCCGCCTCCACCGCCCCCACCCCCATTAGTGCATGGGGCATTTCCTTCACCATCTCTAATGAAAACAGCACCACCACCTCCGCCCCCACCCTTGCATAGTGCATCTCCAGCACTATCTTTATTGCATGGAGCCCCACCTCCACCATCTCCACCACCTTCAAAGCAGAGAGCATCACCTCCGCCACCTCCTCCTCCGCCACCTTCCATATATGGAGCCCCACCTCCACCACTTCCTCCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCACCACCTGCCGTGTACGGAGCCCCACCTCCGCCACCTCCTCCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCGCCACCTCCTCCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCGCCACCTCCTCCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCACCACCTCCTTCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCACCACCTCCTCCCCCACCACCTGCCGTGTACGGAGCCCCACCTCCACCACCTCCTCCTCCACCACCTGCCATGTATGGAGCCCCACCTCCACCACCTCCACCACCTCCTCCCCCACCACCTTCCATGTATGGAGTCTCGCCCCCACCACCTCCTCCCCCACCACCTTCCATGTATGGAGCCTCACCTCCACCACCTTCTATACATGGAGCCCCACCCCCACCTCCTCCCCCACCTTCGATGTTTGGTGCAACTCCTCCTTTGACCCCTACAATGTGGGGGGTACCCCCTCCTCCTCCACCCTCCTCTATGCGTGGGGCTCCTCCACCCCCTCCACCTCCACCAATGCGTGAGGCTCCTCCACTGCCACCCTCCTTGCGTGGGGCTCCCCCACCACCGCCACCTCCATCTATGCATGGGGCTCCTCCTCCACCACCACCACCTCCTCCAATGCATGGGGCTCCACCACCACCACCTCCTCCGATACGTGGGGCTCTTCCCCCACCACCTCCCCCTCCAATGCATGGAGCCCCTCCCCCACCACCACCACCCGGGGGTGGTAGAGCCCCTCCCCCTCCTCCCCCGCCCGGGGGTGGTAGAGCCCCTCCCCCGCCCGGGGGTGGTAGAGCCCCTCCCCCGCCTCCCCCGCCTGGGGGTGGTGGAGCACCAACACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCTGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCACTAGGTGCTAAAGGAGCAAATGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGCTCAACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAAAGATACGGCGAGCCTCAAATTGCTCCAGAGTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGATGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACATTGAATCAAGGAACAGCAAGGGGATCTGCAGTTGGCTTCAAGCTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCACTATCTTTGCAAGGTCCTCGCTTCAAAGACACCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTCGAGCCAGCAACCAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGTCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGACATCTGTGACAAATCTATACTCTACCGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 5145 49.41 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDAREQYPKDFRVEALFLDADAVVPSLTTSFDDEDGNETGAASPEEFFEVEEIFSSVIDGQEAKGSSDPQVVNHINRKEDWKEDFDPPAFQDCDDGNLKHDKKSDFDAVKDITVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAANVPTHAKIQGLVDDAYEKCEGMEEKDDGRDTTPEKLENKVLQKKLSADGSRQKSEKLQTPIPKKQPISSGKPTADMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKAAATTDSLVATDVFTERKNYEVDSVRPSHSAPGNLMLGPSSPVESIEETYSSSETLKPSHSDAQLGVPLPPLPTKPPSPYLPSPRQANEIPPPPPPPPPPPTSFHHIATRSSALPLSASLAPPFIVNSPKAVNTPAPPPPPPSSRQNSVLPHSSTQPSWEQIYSSVSTGTVTDSIPPPPPPSSVGMPSTLKNIVSTSPVPVLSPFSALLASSHKGISLPPPPPPPPPPPPPPPPPPSMKHEAPVPPPPPPPPPPPPPPLVHGAFPSPSLMKTAPPPPPPPLHSASPALSLLHGAPPPPSPPPSKQRASPPPPPPPPPSIYGAPPPPLPPPPPAVYGAPPPPPAVYGAPPPPPPPPPPAVYGAPPPPPPPPPPAVYGAPPPPPPPPPPAVYGAPPPPPPSPPPAVYGAPPPPPPPPPPAVYGAPPPPPPPPPPAMYGAPPPPPPPPPPPPPSMYGVSPPPPPPPPPSMYGASPPPPSIHGAPPPPPPPPSMFGATPPLTPTMWGVPPPPPPSSMRGAPPPPPPPPMREAPPLPPSLRGAPPPPPPPSMHGAPPPPPPPPPMHGAPPPPPPPIRGALPPPPPPPMHGAPPPPPPPGGGRAPPPPPPPGGGRAPPPPGGGRAPPPPPPPGGGGAPTPPPPPGGGRGAPAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVTSVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 1714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27607055 27627435 + CmPI595203_06g016480.1 Cmu06g1648 419308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1648 1714 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1304 1702 IPR015425 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 522 536 - -
Cmu06g1648 1714 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cmu06g1648 1714 Pfam Formin Homology 2 Domain 1309 1676 IPR015425 -
Cmu06g1648 1714 Coils Coil 1677 1706 - -
Cmu06g1648 1714 Coils Coil 1583 1603 - -
Cmu06g1648 1714 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 635 730 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 834 902 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 662 678 - -
Cmu06g1648 1714 PANTHER FORMIN-J 1 799 IPR051144 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 687 722 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 552 566 - -
Cmu06g1648 1714 CDD PTP_PTEN-like 16 190 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 909 1284 - -
Cmu06g1648 1714 SMART PTEN_C2_2 198 338 IPR014020 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 1689 1704 - -
Cmu06g1648 1714 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cmu06g1648 1714 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 1689 1714 - -
Cmu06g1648 1714 SMART it6_source 710 1712 IPR015425 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 830 1315 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 765 790 - -
Cmu06g1648 1714 Gene3D Formin, FH2 domain 1301 1688 IPR042201 -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 743 814 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 750 764 - -
Cmu06g1648 1714 Gene3D - 205 336 - -
Cmu06g1648 1714 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cmu06g1648 1714 FunFam Formin-like protein 1304 1688 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 491 521 - -
Cmu06g1648 1714 MobiDBLite consensus disorder prediction 491 575 - -
Cmu06g1648 1714 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1378 1703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1671 Cmu-Chr5:26685547 Cmu06g1648 Cmu-Chr6:27607055 1.90E-250 dispersed
Cmu06g1648 Cmu-Chr6:27607055 Cmu07g0281 Cmu-Chr7:2802147 2.10E-203 dispersed
Cmu02g0849 Cmu-Chr2:10220699 Cmu06g1648 Cmu-Chr6:27607055 3.50E-27 transposed
Cmu05g1539 Cmu-Chr5:24171172 Cmu06g1648 Cmu-Chr6:27607055 5.20E-25 transposed
Cmu05g2548 Cmu-Chr5:34251523 Cmu06g1648 Cmu-Chr6:27607055 8.60E-25 transposed
Cmu04g1244 Cmu-Chr4:26934156 Cmu06g1648 Cmu-Chr6:27607055 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1648 K28090 - csv:101215105 1308.51