Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1654 ATGCACGCACGCCATATGTTCGATGAAATGTCGCTGAGAAGATGCGGCTCATTGTTGAAGTTAAAATGGGATAGCTTCATTGTGCAATCCTTCTATATGCAGCATCGCTTTTGTTCCCTTCATTCCACCATAGACAAGAGAGCTTCTGTAATAAAACTGTGCGAAGTGATTTCGTGCACGATCGGTGGGTTAGATGAACTGGAATCCAGTCTGAATAAATGTACAATATCATTGACGTCTTCACTCGTTACCCAGGTTATCGATTCTAGCAAAAACGAAGCTCCCATTAGAAGATTGCTTAGGTTTTTCTTATGGTCTCTCAAGAAGTTAAACCACGATTTAGAAGATGAAGATTTCAATTATGCCATCCGCTTCTTTGCTCAGAAGAAGGACTACACTGCCATTAATATTTTACTTTCCAATCTTAAGAAAGCTGACCGCACAATGGACGGCCAGACCTTCGGTTTCGTGGCTGAGGCTTTAGTCAGAATGGATAGAGAAGATGAAGCATTGGGTCTGTTCAAGAACTTGGATAAGTACAAATGCCCACATGACCAATTTACTGTCACTGCAGTTATTACTGCTCTTTGTGCAAAAGGGCATGCTAAAAGAGCAGAAGGGGTTGTCTTGCACCACAAGGACAAGATTTCTAGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCTATTAAGAAGAACACAAAAGAAGCAAGAAGAATACTCAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTTCCTCAATTGTCTTTGTGAGCAGAATCTTGAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCCTTGAATGTGATGATGGAAATGAGATCCTACAAAATTGCTCCTAACTCAATCAGTTATAATATATTGTTGTCATGTCTGGGTAGAACGAGGAGAGTGAAGGAATCATGTACAATCCTTGAGACAATGAAACGATCTGGTTGTCGACCCGATTGCATAAGCTATTATCTTGTGGCAAGAGTGTTGTTCTTGACTGGAAGATTTGGGAAAGGGCGCAGAATTGTGGACGAGATGATTGAAGAAGGGTTGATCCCGGATCGAAAATTCTACTATGATTTGATTGGTGTTCTGTGTGGTGTTGAGAGAACAAATTATGCACTTGAGCTTTTTGAGAAAATGAAGAGAAGCTCATTGGGGGGTTATGGGCCAGTTTATGATGTGCTTATACCAAAGCTTTGTCGAGGAGGAGATTTTGAAATGGGCAGGAAACTTTGGGAGGAGGCCATGGCTATGGGCGTTATGCTTAGCTGCTCAAGTGAGGTTTTGGATCCTTCAATCACAAAGGTTTTCAAGCCAACAAGAAAGATTGAGAATAAAATTCTTGAAGAATGCAATAGAGGTGAGAAGCAGAACAAAGCTGCTACTGAGAAACCAAAAGAAAAGAGAAAGAAAAGTAAGAATCTGTCTTGGAAATAA 1479 40.7 MHARHMFDEMSLRRCGSLLKLKWDSFIVQSFYMQHRFCSLHSTIDKRASVIKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPIRRLLRFFLWSLKKLNHDLEDEDFNYAIRFFAQKKDYTAINILLSNLKKADRTMDGQTFGFVAEALVRMDREDEALGLFKNLDKYKCPHDQFTVTAVITALCAKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLNCLCEQNLEKNPSGLVPEALNVMMEMRSYKIAPNSISYNILLSCLGRTRRVKESCTILETMKRSGCRPDCISYYLVARVLFLTGRFGKGRRIVDEMIEEGLIPDRKFYYDLIGVLCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRKLWEEAMAMGVMLSCSSEVLDPSITKVFKPTRKIENKILEECNRGEKQNKAATEKPKEKRKKSKNLSWK 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27671694 27673172 - CmPI595203_06g016540.1 Cmu06g1654 419314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1654 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Cmu06g1654 492 MobiDBLite consensus disorder prediction 468 492 - -
Cmu06g1654 492 FunFam Pentatricopeptide repeat-containing protein At5g14080 219 490 - -
Cmu06g1654 492 Gene3D Tetratricopeptide repeat domain 275 491 IPR011990 GO:0005515(InterPro)
Cmu06g1654 492 Gene3D Tetratricopeptide repeat domain 85 274 IPR011990 GO:0005515(InterPro)
Cmu06g1654 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Cmu06g1654 492 MobiDBLite consensus disorder prediction 468 484 - -
Cmu06g1654 492 NCBIfam pentatricopeptide repeat 335 367 IPR002885 -
Cmu06g1654 492 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Cmu06g1654 492 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 3 437 - GO:0003729(PANTHER)|GO:0005739(PANTHER)
Cmu06g1654 492 Pfam PPR repeat 374 397 IPR002885 -
Cmu06g1654 492 Pfam PPR repeat family 222 267 IPR002885 -
Cmu06g1654 492 Pfam PPR repeat family 296 336 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1654 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g589 . . . . . Bpe13g00309 . . . . Cma10g00206 Cma11g00128 . Car11g00168 Sed08g0498 . Cpe04g01484 Bhi02g00742 Tan09g1708 Cmetu05g1231 . Hepe09g0469 . . Cla06g01576 Cam06g1743 Cec06g1802 Cco06g1803 Clacu06g1709 Cmu06g1654 Cre06g2466 . . . . . . . . Blo13g00001 . . . . . . . . Cmo10g00224 Cmo11g00184 . . . . . Cpe18g00781 . . . . . . . . . . . . . . Lsi06g01449 Csa01g00255 Chy02g02480 Cme02g01866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010499 1 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 31