Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1663 ATGGAGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACGGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTTACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATATAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTCCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.26 MEFLGFLLVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27751933 27752837 + CmPI595203_06g016630.1 Cmu06g1663 419323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1663 251 CDD DPBB_EXPA_N 28 154 - -
Cmu06g1663 251 FunFam Expansin 18 155 - -
Cmu06g1663 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cmu06g1663 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 Gene3D - 156 251 IPR036749 -
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cmu06g1663 251 FunFam Expansin 159 251 - -
Cmu06g1663 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cmu06g1663 251 Gene3D - 16 155 IPR036908 -
Cmu06g1663 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cmu06g1663 251 SMART dpbb_1 64 149 IPR007112 -
Cmu06g1663 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cmu06g1663 251 PANTHER EXPANSIN-A15 20 251 IPR002963 GO:0009664(InterPro)
Cmu06g1663 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cmu06g1663 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1663 Cmu-Chr6:27751933 Cmu11g0982 Cmu-Chr11:15107540 6.90E-111 dispersed
Cmu04g1254 Cmu-Chr4:26999717 Cmu06g1663 Cmu-Chr6:27751933 2.10E-93 wgd
Cmu05g2469 Cmu-Chr5:33667992 Cmu06g1663 Cmu-Chr6:27751933 2.90E-116 wgd
Cmu06g1663 Cmu-Chr6:27751933 Cmu09g1739 Cmu-Chr9:33422439 6.00E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1663 - - - 0.0