Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1671 ATGGACGCCACTTGGGGGCCGAAGTGTGAAGTAATGGTCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTACCTATAAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGCTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCGGGACGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATGTAA 960 37.19 MDATWGPKCEVMVFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQCFSSSTTIHDRDEEDDEEMKYLLSDCSFSSTNCTLFM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27793873 27795525 - CmPI595203_06g016710.1 Cmu06g1671 419331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1671 319 PANTHER PROTEIN RKD4 133 280 IPR044607 GO:0003700(InterPro)
Cmu06g1671 319 MobiDBLite consensus disorder prediction 109 147 - -
Cmu06g1671 319 Coils Coil 218 238 - -
Cmu06g1671 319 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cmu06g1671 319 Pfam RWP-RK domain 151 198 IPR003035 -
Cmu06g1671 319 MobiDBLite consensus disorder prediction 112 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1671 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2038 Cmu-Chr1:33439183 Cmu06g1671 Cmu-Chr6:27793873 1.40E-15 transposed
Cmu05g1859 Cmu-Chr5:28596861 Cmu06g1671 Cmu-Chr6:27793873 7.60E-08 transposed
Cmu05g1010 Cmu-Chr5:9331340 Cmu06g1671 Cmu-Chr6:27793873 4.40E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1671 . 149 267 AtRKD Transcription Factor Family AT1G18790 73.1 3.1e-40 162.5
Cmu06g1671 . 151 263 AtRKD Transcription Factor Family AT1G74480 70.8 3.2e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6436 PF02042 RWP-RK 5.80E-21 No_clan Cmu TF