Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1671 ATGGACGCCACTTGGGGGCCGAAGTGTGAAGTAATGGTCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTACCTATAAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGCTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCGGGACGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATGTAA 960 37.19 MDATWGPKCEVMVFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQCFSSSTTIHDRDEEDDEEMKYLLSDCSFSSTNCTLFM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27793873 27795525 - CmPI595203_06g016710.1 Cmu06g1671 419331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1671 319 PANTHER PROTEIN RKD4 133 280 IPR044607 GO:0003700(InterPro)
Cmu06g1671 319 MobiDBLite consensus disorder prediction 109 147 - -
Cmu06g1671 319 Coils Coil 218 238 - -
Cmu06g1671 319 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cmu06g1671 319 Pfam RWP-RK domain 151 198 IPR003035 -
Cmu06g1671 319 MobiDBLite consensus disorder prediction 112 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2038 Cmu-Chr1:33439183 Cmu06g1671 Cmu-Chr6:27793873 1.40E-15 transposed
Cmu05g1859 Cmu-Chr5:28596861 Cmu06g1671 Cmu-Chr6:27793873 7.60E-08 transposed
Cmu05g1010 Cmu-Chr5:9331340 Cmu06g1671 Cmu-Chr6:27793873 4.40E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6436 PF02042 RWP-RK 5.80E-21 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1671 - - - 0.0