Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1686 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCTTCCTCACTGACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAACAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGAAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCACCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCCTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTACCCCCAAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTCATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCCGCCCCCACCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTCGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1611 43.39 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPNSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTATAAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPQKYPFTSLDFGSSQPNFMSWNNNNNSGHQAYSNISKNNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSFVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27912671 27917452 - CmPI595203_06g016860.1 Cmu06g1686 419346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1686 536 MobiDBLite consensus disorder prediction 516 536 - -
Cmu06g1686 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 494 IPR044810 GO:0003700(InterPro)
Cmu06g1686 536 MobiDBLite consensus disorder prediction 1 41 - -
Cmu06g1686 536 MobiDBLite consensus disorder prediction 356 377 - -
Cmu06g1686 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1686 536 FunFam probable WRKY transcription factor 31 202 279 - -
Cmu06g1686 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1686 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1686 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1686 536 MobiDBLite consensus disorder prediction 152 204 - -
Cmu06g1686 536 MobiDBLite consensus disorder prediction 492 511 - -
Cmu06g1686 536 Coils Coil 37 85 - -
Cmu06g1686 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2122 Cmu-Chr1:33992635 Cmu06g1686 Cmu-Chr6:27912671 2.90E-41 dispersed
Cmu05g1093 Cmu-Chr5:10343610 Cmu06g1686 Cmu-Chr6:27912671 9.10E-43 dispersed
Cmu06g1686 Cmu-Chr6:27912671 Cmu10g2058 Cmu-Chr10:26419421 3.90E-23 dispersed
Cmu01g1412 Cmu-Chr1:27627132 Cmu06g1686 Cmu-Chr6:27912671 3.70E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6441 PF03106 WRKY 1.20E-23 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1686 - - - 0.0