Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1700 ATGGAAGCTCCTCCGATTCCGAGCAACAGATGGATGGCTACCGTTGCCAGCATTTGGATCCAGTGCATCTGCGGTCCATCCTACACCTTCAGCATCTACTCCGCCGCCCTCAAATCCACTCAAAACTACGATCAATCCACTCTCGACACTGTTTCCGTCGTCAAAGATATCGGCGCCACCGCCGGGGTTCTCTCCGGCCTCCTCTACTCCGCCGTCGTCTCCACAGACCACCCCCGTCGCCCATGGATCGTCCTCACCGTCGGAGCTATTCAATGTTTCCTTGGATACATTTTCATGTGGGCCGCCGTCTCCGGCTTAATCCCTCGACCGCCGGTGCCGACAATGTGTCTGTTCATGTTCTTAGCCGTCCATGCCCAAGTTTTCTTCAACACGGCTAATGTTGTCACTGGCGTTCATAATTTCCAGCTCTACAGCGGCACCATTGTCGGCATTCTAAAGGGATTTTTGGGTCTTAGTGCAGCAGTACTGATCCAATTCTCCAACGCATTCTTCAACGGAGACCCTGTAAATTATCTTTTGATGCTGGCGATTTTGCCGGCGGTTACGACTCTGTTGCTCATGAGATTCGTCTTAATCGACAATAAAACAGAGACCGGAAATGAATTGACCCATTTGAATTCCCTCTCGACAATTGCTCTAACAATCTGCGGATATCTCATGATTCTAATCATTTTAGACAACGTTCTCAATCTAGCGACATGGGTTCGCATCTTCACCTTCATTCTCCTCCTCGCCTTTCTTGTTTCCCCTGTCGGAATCGCAATCAGAGCAAAAACAGAAGACTCTGTTTTCAAAACGAAGCTTCAAATTACCGAGAATCCCGTTGAATATCATCGCATTCCCAGCGAGGAGAAGATCAATGATGAGCTGGTGATTGTTAAAGACGGAGAAATGAATATAATCGAGGCAATTGGCACAATGAATTTCTGGCTATTGTTTTTCGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGTGCCGGTCCTTGGGATACAGAACAGCCGAAATCAATACATTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGGCGTTTGGGATCTGGCTATGCCTCTGATCTTCTCCTCTGGAAATTAGGGTGGGCGAGGCCATTGTTAATGGCCATTGCCTTGCTAACAATGAGCATCGGCCATATCATCGTAGCTTTAGGATTTCGTGGGAATTTGTACTTGGGATCGGTGATTATCGGGATTTGTTACGGGTCTCAATGGTCGTTAATGCCGGCAATTACGTCGGAGATATTTGGAGTAAAGCATATGGGTACGATTTACAATACCATTGCTGTGGCTAGTCCGATTGGATCTTATGTTTTTGTCTGTTAG 1386 47.33 MEAPPIPSNRWMATVASIWIQCICGPSYTFSIYSAALKSTQNYDQSTLDTVSVVKDIGATAGVLSGLLYSAVVSTDHPRRPWIVLTVGAIQCFLGYIFMWAAVSGLIPRPPVPTMCLFMFLAVHAQVFFNTANVVTGVHNFQLYSGTIVGILKGFLGLSAAVLIQFSNAFFNGDPVNYLLMLAILPAVTTLLLMRFVLIDNKTETGNELTHLNSLSTIALTICGYLMILIILDNVLNLATWVRIFTFILLLAFLVSPVGIAIRAKTEDSVFKTKLQITENPVEYHRIPSEEKINDELVIVKDGEMNIIEAIGTMNFWLLFFAMMCGMGSGLATINNMNQLCRSLGYRTAEINTFVSLWSIWNFLGRLGSGYASDLLLWKLGWARPLLMAIALLTMSIGHIIVALGFRGNLYLGSVIIGICYGSQWSLMPAITSEIFGVKHMGTIYNTIAVASPIGSYVFVC 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28042522 28043990 + CmPI595203_06g017000.1 Cmu06g1700 419360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1700 461 Gene3D MFS general substrate transporter like domains 206 460 IPR036259 -
Cmu06g1700 461 ProSiteProfiles Major facilitator superfamily (MFS) profile. 314 461 IPR020846 GO:0022857(InterPro)
Cmu06g1700 461 CDD MFS_Mch1p_like 10 459 - -
Cmu06g1700 461 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 459 - GO:0016020(PANTHER)
Cmu06g1700 461 SUPERFAMILY MFS general substrate transporter 221 458 IPR036259 -
Cmu06g1700 461 Pfam Nodulin-like 10 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1700 Cmu-Chr6:28042522 Cmu11g0775 Cmu-Chr11:8257824 1.60E-65 dispersed
Cmu06g1699 Cmu-Chr6:28036210 Cmu06g1700 Cmu-Chr6:28042522 6.10E-165 tandem
Cmu06g1700 Cmu-Chr6:28042522 Cmu06g1701 Cmu-Chr6:28047481 2.20E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1700 - - - 0.0