Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1706 ATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAAGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCTGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGATTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 828 43.48 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGCGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28079906 28082960 + CmPI595203_06g017060.1 Cmu06g1706 419366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1706 275 MobiDBLite consensus disorder prediction 69 84 - -
Cmu06g1706 275 MobiDBLite consensus disorder prediction 47 68 - -
Cmu06g1706 275 MobiDBLite consensus disorder prediction 105 144 - -
Cmu06g1706 275 CDD bHLH_AtBPE_like 143 225 - -
Cmu06g1706 275 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Cmu06g1706 275 Gene3D - 150 224 IPR036638 GO:0046983(InterPro)
Cmu06g1706 275 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Cmu06g1706 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu06g1706 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983(InterPro)
Cmu06g1706 275 MobiDBLite consensus disorder prediction 85 104 - -
Cmu06g1706 275 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Cmu06g1706 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Cmu06g1706 275 Coils Coil 200 220 - -
Cmu06g1706 275 MobiDBLite consensus disorder prediction 47 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1706 Cmu-Chr6:28079906 Cmu08g0851 Cmu-Chr8:20801322 1.90E-69 dispersed
Cmu06g1706 Cmu-Chr6:28079906 Cmu02g0518 Cmu-Chr2:4806900 9.70E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6444 PF00010 HLH 2.20E-08 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1706 - - - 0.0