Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1710 ATGAGCAACAACGTTGGGATAAGACTGGGTTCTCCACATGAGAGCTTCAATGGAGTAGCGGTCAAAATAAGACACATTACGTCTTTCTTCTTTGCAGTTCCAAGAGTTTCAGAGTTGCTCTCAGATTTCAAGATCAAACTCCGAGACGGTGGGCCCGGACGCACGAATTCATCCAGTCAGATGCCACGTGGCAGAGATCCTCTAGGGAATTCGTTGTATCACCTAATGGTGGAGGCGTTGACCAAAGGTCAAATGAAAGATCAGACGGCTGAGATTCTGCCTTCTACCCCGAGACTGATCGAAACCGAAGGGGCCCTTCCCAGCATGGAGCTTCAGAATACAGTGAAAGAAGCCCTAAACGCACTGTACCATCACCCTGACGATGCCTTCCGTATGCAAGCCGATCGATGGCTTCAAGACTTCCAGCGCACTCTCGATGCCTGGCAGGTTGCCGATAATTTGCTTCACGAACCCACCAGCAATTTGGAAACTTTGATCTTTTGCTCTCAAACACTTAGAAGCAAGGTACAAAGAGATTTTGAAGAACTGCCTTCGGAAGCATTTAGACCCTTGCGCGACTCATTAAATAATTTATTAAGAAAATTTCACAAGGGCCCACCTAAAGTTCGAACTCAGATTAGCATAGCAGTGGCTGCATTAGCAGTACATGTTCCTGCTGATGATTGGGGAGAAGGCGGTATCGTAAATTGGCTCAGGAATGAGATGAACTCACATCCGGAGTATGTACCCGGATTTTTGGAGCTACTGACAGTTTTGCCTGAGGAAGTATACAATTACAAGATCGCAGCTCGGCCGGATAGACGCCGTCAATTTGAAAAGGAACTCACATCCCAAATGGAAGTTACCCTTAATATCTTGACAGCTTGTTTGAATATTAATGAGCTGAAGGAGCAGGTGCTCGAGGCATTTGCTTCTTGGCTTCGATTAAAGCATGGGATCCCAGGATCTGTGCTTGCATCACATCCTTTAGTACTCACAGCTCTAGCAAGTTTGAATTCCGAGCTTCTCTCAGAGGCATCAGTAAACGTTATTTCTGAATTGATACACTATTCAGCAGCTGGAAACTCAAGTGGTCTCCCAGTGCACATGCCTTTAATTCAAGTAATTGTCCCTCAAGTTATGAATTTGAAGGCACAACTTAGAGATTCTTCAAAGGATGAGGAAGATGTGAAGGCCATTGCTCGGTTATTTGCTGACATGGGTGATTCATATGTTGAATTGATTGCTACTGGTTCTGATGAATCGATGTTAATAGTCCATGCCCTACTAGAAGTTACTTCACACCCAGAATATGATATTGCCTCCATGACATTTAATTTTTGGCATAGTCTTCAGTTGAACTTGACAAAAAGGGATGCATATGTTTCTTTTGGCAATGATGCTTCCATTGAAGCTGAAAGGAAAAGGAGGTTACAAATATTTCGTCCAGTTTACGAGTCCCTTGTATCCTTGGTTAGTTTCAGAGTTCAATATCCTAATGACTATCAAGACCTTTCTTATGAGGACCTCAAGGAATTCAAGCAGACTAGATATGCTGTTGCAGATGTCTTAATTGATGCAGCATTGGTTTTAGGAGGTGATATGACTCTGAAAATTCTTTACGTGAGGCTCGTGGAGGCTGTTACAAGCTGTGGAAATAGTGAACAGAGTGAATGGCGTCCAGCAGAGGCTGCTTTGTTTTGCATCCGAGCTATATCAGATTATGTCTCAGTCGGTGAGGCCGAAATAATGCCGCAGGTCATGGGTTTACTTCCAAAACTTCCTCAGCAAGCCCAATTACTTCAGACAGTGTGCTACACTGTTGGAGCATACTCGAAGTGGCTTGATGCATCATCAAGTGGGCAATCAATACTACCCTCAGTAATTGATATCCTCATGAGTGGAATGGGCACATCCGAGGATTCTGCAGCTGCTGCAGCTCTGGCATTTAGAGATATTTGCGCTGATTGCCGGAGAAAGCTTTGTGGATTTTTGGATGGTCTCTTCCATATATATAATGTGACGGTCAATGGAGAAAGTAGTTTGAAGGTGACTGCTGAGGACTCGCTGCACCTAGTGGAAGCATTAAGCATGGTTATCACTGAACTTGTGCCCGATCAAGCTAAAAGAGCACTGGAGGCATTGTGCTTACCTGTTGTTGCTCCTCTGCAGGAAATTGTCAATCAAGGCCCAGAAGTATTGAATAAGAAGCCTTCTAATGAGTTGACAGTCCATATTGATCGGTTTGCTTATATATTCAGATATGTAAATCACCCTGAAGCTGTTGCAGATGCTATACAGAGGCTTTGGCCAATTTTCAAAGCCATCTTCGATATCCGTGCTTGGGACATGCGGACTATGGAATCTCTTTGCCGAGCATGCAAATATGCTGTGAGAACTTCCGGTAGATTTATGGGAATCACAATTGGAGCGATGTTGGAAGAAATTCAAGGTCTATATAACCAGCACCACCAGCCTTGCTTTCTTTATCTGTCTAGTGAAGTCATAAAGATTTTTGGTTCTGATCCATCTTGCGCAAGTTATCTCCAAAGTTTGATTGAAGCATTATTCATGCACACAACACGTCTTCTCACAAGTATTCAGGAATTTACTGCTAGGCCGGATATTGCTGATGACTGCTTTCTTTTGGCCTCGAGATGTATACGATATTGCCCTCAATTATTTATTCCATCTTCGGTATTTCCAGCACTAATAGATTGTTCAATGGTCGGAATCACAGTACAGCACAGGGAAGCCTCAAATTCAATATTGACTTTCTTGGCTGATGTTTTTGATCTTGCAAATTCAAGCAAAAGTGAACAGTATATATCTAGAAGGGATGCAATAGTTATACCTCGAGGTCACGTTATCCTTCGAATTTTGGTTGCAGCCTTGACGGGGGCACTGCCAAGTTCTCGATTAGAACCGGTGACGTACACACTATTAGCGTTAACTCGAGCTTATAGAGTACAAGCGTTAGAGTGGGCCAAGGAAAGTGTTTCATTGATTCCATCGACGGCTGTTACTGAAAAAGAGCGGTCAAGATTTCTAAAAGCGTTATCAGATGCAGCCTCAGGATGCGATATAAATACGCTTGCTGTACCAATAGAAGAGCTCTCAGACCCCGCCCAGAAGAAATTCACGGCTGGCTTTGATAATTTTATCCATCTTGTTCAAGTTTTCAAGGGTTTCATTCCTCGATTGGATTCTCGAGCAACAATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTCCTCCTCCTTCATCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAGAGGGTGAGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 4674 44.07 MSNNVGIRLGSPHESFNGVAVKIRHITSFFFAVPRVSELLSDFKIKLRDGGPGRTNSSSQMPRGRDPLGNSLYHLMVEALTKGQMKDQTAEILPSTPRLIETEGALPSMELQNTVKEALNALYHHPDDAFRMQADRWLQDFQRTLDAWQVADNLLHEPTSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNNLLRKFHKGPPKVRTQISIAVAALAVHVPADDWGEGGIVNWLRNEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTSQMEVTLNILTACLNINELKEQVLEAFASWLRLKHGIPGSVLASHPLVLTALASLNSELLSEASVNVISELIHYSAAGNSSGLPVHMPLIQVIVPQVMNLKAQLRDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVTSHPEYDIASMTFNFWHSLQLNLTKRDAYVSFGNDASIEAERKRRLQIFRPVYESLVSLVSFRVQYPNDYQDLSYEDLKEFKQTRYAVADVLIDAALVLGGDMTLKILYVRLVEAVTSCGNSEQSEWRPAEAALFCIRAISDYVSVGEAEIMPQVMGLLPKLPQQAQLLQTVCYTVGAYSKWLDASSSGQSILPSVIDILMSGMGTSEDSAAAAALAFRDICADCRRKLCGFLDGLFHIYNVTVNGESSLKVTAEDSLHLVEALSMVITELVPDQAKRALEALCLPVVAPLQEIVNQGPEVLNKKPSNELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYNQHHQPCFLYLSSEVIKIFGSDPSCASYLQSLIEALFMHTTRLLTSIQEFTARPDIADDCFLLASRCIRYCPQLFIPSSVFPALIDCSMVGITVQHREASNSILTFLADVFDLANSSKSEQYISRRDAIVIPRGHVILRILVAALTGALPSSRLEPVTYTLLALTRAYRVQALEWAKESVSLIPSTAVTEKERSRFLKALSDAASGCDINTLAVPIEELSDPAQKKFTAGFDNFIHLVQVFKGFIPRLDSRATMVSASTRQKNMHSLLVANLTKLTIPSSSSSSSPPPSSAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVSETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28098377 28120697 + CmPI595203_06g017100.1 Cmu06g1710 419370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1710 1557 SMART pkinase_C_6 1489 1548 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 SUPERFAMILY Protein kinase-like (PK-like) 1221 1550 IPR011009 -
Cmu06g1710 1557 FunFam Transportin MOS14 110 1039 - -
Cmu06g1710 1557 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 113 1031 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Cmu06g1710 1557 ProSitePatterns Protein kinases ATP-binding region signature. 1230 1261 IPR017441 GO:0005524(InterPro)
Cmu06g1710 1557 FunFam Non-specific serine/threonine protein kinase 1221 1334 - -
Cmu06g1710 1557 MobiDBLite consensus disorder prediction 47 66 - -
Cmu06g1710 1557 Pfam Protein kinase domain 1226 1488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 ProSiteProfiles AGC-kinase C-terminal domain profile. 1489 1556 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 MobiDBLite consensus disorder prediction 1122 1144 - -
Cmu06g1710 1557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1351 1363 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 CDD STKc_AGC 1230 1488 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cmu06g1710 1557 ProSiteProfiles Protein kinase domain profile. 1224 1488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 MobiDBLite consensus disorder prediction 1175 1206 - -
Cmu06g1710 1557 Pfam Protein kinase C terminal domain 1509 1546 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 SMART serkin_6 1224 1488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1710 1557 MobiDBLite consensus disorder prediction 1126 1140 - -
Cmu06g1710 1557 Pfam Exportin 1-like protein 206 351 IPR013598 -
Cmu06g1710 1557 Pfam Importin-beta N-terminal domain 134 199 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
Cmu06g1710 1557 SUPERFAMILY ARM repeat 109 943 IPR016024 -
Cmu06g1710 1557 Gene3D Transferase(Phosphotransferase) domain 1 1312 1507 - -
Cmu06g1710 1557 Gene3D - 107 1033 IPR011989 -
Cmu06g1710 1557 FunFam Non-specific serine/threonine protein kinase 1312 1507 - -
Cmu06g1710 1557 Gene3D Phosphorylase Kinase; domain 1 1223 1530 - -
Cmu06g1710 1557 MobiDBLite consensus disorder prediction 1190 1206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2204 Cmu-Chr5:31524223 Cmu06g1710 Cmu-Chr6:28098377 1.40E-54 dispersed
Cmu06g0928 Cmu-Chr6:12960130 Cmu06g1710 Cmu-Chr6:28098377 5.50E-16 dispersed
Cmu06g1710 Cmu-Chr6:28098377 Cmu08g1531 Cmu-Chr8:27150874 3.50E-56 dispersed
Cmu06g1710 Cmu-Chr6:28098377 Cmu02g0315 Cmu-Chr2:2865665 3.50E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75635 PF00069 Pkinase 7.20E-71 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1710 K15436 - csv:101215103 1775.37