Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1717 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAACCGCATCCCCATCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGAGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCTCTGGAAGAAGCTGCATGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTGTTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGCGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 45.37 MAIPIPSRQLFIDGEWREPVLKNRIPIINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICKDVGLPSGVLNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28187964 28192686 - CmPI595203_06g017170.1 Cmu06g1717 419377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1717 503 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Cmu06g1717 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Cmu06g1717 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Cmu06g1717 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Cmu06g1717 503 Pfam Aldehyde dehydrogenase family 20 485 IPR015590 GO:0016491(InterPro)
Cmu06g1717 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Cmu06g1717 503 CDD ALDH_F10_BADH 27 487 - -
Cmu06g1717 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Cmu06g1717 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 278 - -
Cmu06g1717 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0445 Cmu-Chr6:5032240 Cmu06g1717 Cmu-Chr6:28187964 3.60E-57 dispersed
Cmu06g1717 Cmu-Chr6:28187964 Cmu06g1740 Cmu-Chr6:28374396 1.90E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1717 K00130 - csv:101213657 955.666