Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1719 ATGGGCGGCAATGGCAAGTTCCGGTGGAAATTCCCCTTCCCTCACCGTCGTAATTCTAGGCTTGAATCGAACCAGCCTCCTAAAGAGTTCATTTGTCCAGTTTCTGGTTCGTTAATGGCGGACCCTGTCGTCGTCTCTTCTGGACAGACGTTTGAGCGTGTTTCTGCGCAGGTTTGCAGAAATTTAGGGTTCTCTCCTGTGTTAGAGGATGGTTCGAAGCCAGATTTCACTACTGTGATTCCGAATTTAGCTATGAAGAAGACGATTCTCCATTGGTGTGAGAAATCTGGTGCTCGGAATCTTCAGCCGCCTGATTACACCTCCGTTGAGAGCCTTGTTGCTGCATTGATGGAGAAGGAGAAGCCCCAAGCCGGAATTAGGGATTCCTCGGATAGGGATTTGTTAAAGAGAGTATCGGATTTGCCGCCGGTAAATTTTTCGCATGCTGCGACGGAGTATGGTCATCGTCCAGAACATTTCTACAGCAGCTCGTCGGAGGAATCGGTCATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCTTGTTATTATTCATTTTCGTCTTCTTCCTCTGAAACCGTGGAAAACGAAGTGCTCATCCAAACCCTAGGCCCTAATTCATCGATTTCCGAAGATGAGAAGAATTTTTTATCGAAGCTTGAGAGTCCCGATGTGTTTCAGCAAGAAGAAGGCGTTATTTCGCTAAGAAAAATCACGAAAACCAATGAGAATATTAGGGTTTCGCTCTGTACGCCTCGGATTCTTTTCTCTCTCCACCGATTGGTAACGTCGAGATATCCCAAAGTACAAATCAACGCCGTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCCGAACAAACTGAAGATCGCGCGGTCGGGATTGGTTCCACACTTAATCGATGTGCTAAAAGGAGGACATACCGAAGCGCAAGAACACGCCGCCGGCGCGCTCTTCAGCCTAGCTTTAGAGGATGAAAATCGGATGGCGATCGGAGTTCTCGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCCGCTCTGTGTCTCTACAACCTGACAATGATTCAGAGCAACCGAGTGAAGCTTGTGAAACTCGGCGCCGTAACCACTCTACTTTCCATGGTGAAATCAAGAAACTCGACGAATCGGCTGCTACTGATCCTCTGCAACATCGCCGTGTGTCAGGAGGGAAGGTCGGCAATGCTGGACGCCGACGCCGTCGCGCTTTTGGTCGAAATGCTGAGGGAGAAAGAGCTAAACTCCGAATCAACCCGCGAGAATTGCGTTGCGGCATTGTACGCTCTGAGCTATGGAAGCATGAGATTCAAAGGATTAGCGAAGGATGCCGGAGCGATAGAGGTTTTGATAGAGATTGTTGAAAGAGGAAGCGAGAGAGCGAGAGAGAAGGCGAAGAAGATATCGGAGAGGATGAGAACGAGAGGGAGATTCGATGAAGACGACGACGAAGAAGACGATCGTGGAGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCGACTCGGTACCGAATCGGAGGTGGAAAATTTCCCAGCTCGGCTAATACGGTGCCGTTTTGA 1623 50.09 MGGNGKFRWKFPFPHRRNSRLESNQPPKEFICPVSGSLMADPVVVSSGQTFERVSAQVCRNLGFSPVLEDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPDYTSVESLVAALMEKEKPQAGIRDSSDRDLLKRVSDLPPVNFSHAATEYGHRPEHFYSSSSEESVIVGGSPGTPLPFTTRPACYYSFSSSSSETVENEVLIQTLGPNSSISEDEKNFLSKLESPDVFQQEEGVISLRKITKTNENIRVSLCTPRILFSLHRLVTSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPHLIDVLKGGHTEAQEHAAGALFSLALEDENRMAIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNIAVCQEGRSAMLDADAVALLVEMLREKELNSESTRENCVAALYALSYGSMRFKGLAKDAGAIEVLIEIVERGSERAREKAKKISERMRTRGRFDEDDDEEDDRGGESSFERGGLSSTRYRIGGGKFPSSANTVPF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28210981 28212603 - CmPI595203_06g017190.1 Cmu06g1719 419379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1719 540 MobiDBLite consensus disorder prediction 482 540 - -
Cmu06g1719 540 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 Pfam Armadillo/beta-catenin-like repeat 330 368 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 SMART arm_5 409 452 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 SMART arm_5 329 369 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 SUPERFAMILY RING/U-box 16 99 - -
Cmu06g1719 540 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Cmu06g1719 540 Pfam U-box domain 27 95 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu06g1719 540 FunFam RING-type E3 ubiquitin transferase 14 100 - -
Cmu06g1719 540 Gene3D - 399 503 IPR011989 -
Cmu06g1719 540 Gene3D - 217 398 IPR011989 -
Cmu06g1719 540 SMART Ubox_2 29 92 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu06g1719 540 MobiDBLite consensus disorder prediction 482 499 - -
Cmu06g1719 540 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu06g1719 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 98 IPR013083 -
Cmu06g1719 540 SUPERFAMILY ARM repeat 220 485 IPR016024 -
Cmu06g1719 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 336 IPR000225 GO:0005515(InterPro)
Cmu06g1719 540 PANTHER U BOX DOMAIN-CONTAINING 20 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1719 Cmu-Chr6:28210981 Cmu11g1389 Cmu-Chr11:26082089 1.20E-11 dispersed
Cmu01g1377 Cmu-Chr1:27246352 Cmu06g1719 Cmu-Chr6:28210981 2.40E-89 wgd
Cmu06g1719 Cmu-Chr6:28210981 Cmu09g1797 Cmu-Chr9:34140886 3.00E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1719 - - - 0.0