Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1739 ATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTCCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATCGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTCGTTATGGACCCTTCCGCCATTGCTATGCGCTATATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACACTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTATATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACTCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGCTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCAATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCATCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTACTAACATGGGCCTTAGTCCCATCCCCTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGCACTTGACAATGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA 2079 44.16 MHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLISSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAALDNDVTSLKMPKLFKPDEPDFSAFQDEN 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28364609 28369777 + CmPI595203_06g017390.1 Cmu06g1739 419399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1739 692 ProSiteProfiles Adenosine to inosine editase domain profile. 33 89 IPR002466 GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro)
Cmu06g1739 692 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Cmu06g1739 692 MobiDBLite consensus disorder prediction 615 631 - -
Cmu06g1739 692 Pfam Cyclic nucleotide-binding domain 461 550 IPR000595 -
Cmu06g1739 692 Gene3D Jelly Rolls 436 556 IPR014710 -
Cmu06g1739 692 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Cmu06g1739 692 PRINTS EAG/ELK/ERG potassium channel family signature 333 344 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1739 692 PRINTS EAG/ELK/ERG potassium channel family signature 401 408 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1739 692 PRINTS EAG/ELK/ERG potassium channel family signature 351 360 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1739 692 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1739 692 PRINTS EAG/ELK/ERG potassium channel family signature 307 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1739 692 SMART cnmp_10 438 569 IPR000595 -
Cmu06g1739 692 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g1739 692 Gene3D - 43 362 - -
Cmu06g1739 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 663 - -
Cmu06g1739 692 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Cmu06g1739 692 Gene3D Helix hairpin bin 364 428 - -
Cmu06g1739 692 MobiDBLite consensus disorder prediction 613 635 - -
Cmu06g1739 692 CDD CAP_ED 438 569 IPR000595 -
Cmu06g1739 692 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1352 Cmu-Chr6:24717597 Cmu06g1739 Cmu-Chr6:28364609 2.30E-228 dispersed
Cmu06g1739 Cmu-Chr6:28364609 Cmu10g2225 Cmu-Chr10:28377738 1.60E-181 dispersed
Cmu10g2195 Cmu-Chr10:28034987 Cmu06g1739 Cmu-Chr6:28364609 9.00E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1739 K05391 - csv:101209760 1250.73