Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1740 ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACATCTGCTTTGGCAGAGGAGGAACTCATCACTCCTCCTGTTCAGATCAATTACACTCAAAATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGACAAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGTCTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCCGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTCATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTCGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCTGGATCTCGTACTTTTGTTCATGAGCGTGTATACGATGAATTTGTCGAAAAATCAAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGGTCCAAGGGATACTTCATCGAGCCAACAGTTTTCTCAAATGTTAAGGATGATATGTTGATAGCGAAAGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATCGACACAGCCAACATGCTAACACGAGGATTGAGAACGGGAACCGTGTGGCTCAATTGCTTTGACATCTTCGACGCTGCAATACCTTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGCTACTTGCAAGTAAAAGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1653 44.34 MAARRGICSLLSRSLLSSSSASSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEELITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDKGPWPRMTAYERSRILLRCADLIEKHMSELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANMLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28374396 28377568 + CmPI595203_06g017400.1 Cmu06g1740 419400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1740 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 84 540 IPR016162 GO:0016491(InterPro)
Cmu06g1740 550 SUPERFAMILY ALDH-like 66 544 IPR016161 GO:0016491(InterPro)
Cmu06g1740 550 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 74 342 - -
Cmu06g1740 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 322 511 IPR016163 GO:0016620(InterPro)
Cmu06g1740 550 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 344 355 IPR016160 GO:0016491(InterPro)
Cmu06g1740 550 FunFam Mitochondrial aldehyde dehydrogenase 2 322 511 - -
Cmu06g1740 550 CDD ALDH_F2BC 67 542 - -
Cmu06g1740 550 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 316 323 IPR029510 GO:0016491(InterPro)
Cmu06g1740 550 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 60 542 - GO:0004029(PANTHER)
Cmu06g1740 550 FunFam Aldehyde dehydrogenase, putative 512 538 - -
Cmu06g1740 550 Pfam Aldehyde dehydrogenase family 78 540 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1657 Cmu-Chr2:30442914 Cmu06g1740 Cmu-Chr6:28374396 8.20E-247 dispersed
Cmu02g1870 Cmu-Chr2:32618830 Cmu06g1740 Cmu-Chr6:28374396 2.60E-79 dispersed
Cmu06g1068 Cmu-Chr6:20402083 Cmu06g1740 Cmu-Chr6:28374396 1.10E-160 dispersed
Cmu06g1717 Cmu-Chr6:28187964 Cmu06g1740 Cmu-Chr6:28374396 1.90E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1740 K00128 - csv:101209430 1003.43