Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1744 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGGCTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCTGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCGTGAGACCCATGTCTTTGAATCTCAGTACTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCGATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGATGCTTGTGCATTTAGAGGATAAAAGAAACGAGTATATTTTTTTGAACCCCTTTTTAGGTATGATGAGACTCGTGACAAGAACCAATCAGGATAAGAACAACAAGAGCAAGAACAAGAAGAAGGGACGGTCAAGAGAGGGGAAGAACGGTGAAGTCTGCGAGATGGGTGTTGCTAACACCTCGTGGGTTGCTGGACAAGCAATACCCATGCTTCAATTCAGTCCCTTTTGTTGCTTCGATTTATCCCCCAAGAAATCTAATGATTCGAAGCTGATTATGAATTGGGGTTGTTCTATTCCCAACCAGCCTAAGCTTTCTATTACTTCCACTAGAAATCCTAGAAATTCTGCCTTGTTTTGTCGTTGCAGTGGAAATGGCAGTACTAGCGACAGTAATAGTAACTCTTCGTCTTCTTCTTCTTCTTCATCTTTGGAATGGGATTGGGTTAGGTGGAACCGGTATTTCTCTGAAATGGAACAGGCTGAAAGCTTTGCCTCTGTTCTCAAGTTTCAACTTGAAGAGGCCGTTGAGAAAGAAGACTTTGAAGAAGCTGCAAAATTGAAACTGGCTATTGCTGAAACTACACAAAAGGACAGTGTTGCTGAAATTATGAACCAGTTGAAGAGTGCAATAGAGGAGGAGCGATACCAAGATGCTTCAATGTTGTGTAAATGCACAGGAAGTGGATTGGTGGGATGGTGGGTGGGGTACTCTCAAGATTCAGATGATCCCTTTGGCAGATTAATACGTATAACTCCTGGAGTCGGGAGATTTATTGGGAGGGGTTACAGTCCAAGACAGTTGGTTACTGCATCACCAGGAACTCCATTGTTTGAGATCTTTATTGTCAAAGATGATGAGGAGAGATATGTCATGCAGGTAGTGTACTTGCAACGATCCAAAGGAAATTCAAAAATCTCAACAAGTCCACCATCAGAGCCTTCAAATAGCCCCTCCACATCTGGAGTCAAGAATCAAGCTGCTGTAGACATTGCAGAGAATGAGGCTACGAAGGAGCCAAGTGAGGAAAAGGGTGTTACTGTGGAAGGAGCTACTGAGGAGGGAATAAAGGGGGTGATAAATTTTTTGAAAGATAAAATTCCGGGATTAAAAGTTAAAGTAACGAATATCAATGTTTCCAAGGAAGTCATTGAGGATGCTAACTCTGTCAAGCAATTGATGCAAGAAGATAGCGAGAAGACAGAGACTGGTGGGAATTCTGATGATGAAATGGATAAGTTAGATGAGATTCAGCCTGAGGCAGTTTCATTAGGTGAGAATAGCGATGCTAGTGACGATGAAAAAGATCTAGATATGAAGCTTTATATTGGTGGGGTTGTACATAACAGTGAAGAGACTCCTACAAAGGAGGAGTTTGTACGCCATCCAGCTTATATTCAGGATATGGATAGAGATTCTTTTGTGCTGCATATTCCTGGGAGAGGCCTAGATCTTGATGCTGCAGAAAATAAAGTCCCGAAGGTCAAAGTGGCAGCTTTGGCAGCCCAAGGTGTTTCCGAGCTTATGCCTGCTGATGTTGCCAAAGCATTTTGGGGTGTTGATAAGGTTTCTCCAAAGATTTCAAGGAATGTTCGTGAGATAGTCAAACTGGCAGTCAGTCAAGCACAGAAGCGGAGTAAACTATCTGAATATACTACTTTCAATCGGATTACCACATCGAGAGGAGACCTAGATCCATTTGATGGTCTCTATGTTGGTGCATTCGGCCCTTATGGCACTGAGGTGGTGCAGTTGAGACGAAAATTTGGACATTGGAATGATTTGGATGACAAGGACGAAACTTCAGATATGGAGTTCTTTGAGTATGTAGAGGCAGTAAAGCTGACTGGTGATCTTAATATTCCTGCTGGCCAGATCATTTTCCGGGCTAAAATTGGGAGAGTAAACCGCACTGCCAACCGTGGAATGTATCCAGATGAACTGGGAGTGGTTGCAAGTTATAAAGGTCAAGGAAGAATAGCTGAATTTGGATTCCGAAATCCACAATGGGTTGATGGAGAACTTCTCCAACTAAATGGCAGGGGTATTGGGCCATACGTCAAAGGTGCAGATCTCGGGCTTCTCCACGTAGTTCCCGAGCATAGTTTCCTTCTGCCGGATAACTCCAAGGCGATTGTTGTCGTTGATGTTGTTGATAAGAGTACTCAGTTCTCTCCCCTTCCGTCTCCTTACGCCGGCTCTCGTAAGCCGCCGGAGAACGCGAACTTTACTGGAGATAGGTCGACTTCTTCTAAGGTTATGTTTAATCGAGCAATGAAAGAGGAAGTGCCGCAGTCGGTTACTAAAGTAGGGCCGGCTGCTGGTGGAGGCGAGGAGACCGGTGGTGGAGGTGGAGGTGGAGGTGGAAGATCGCCGGTGAAGCAAATGGCGCCGATGTCGAGGAGGTCGAAGGACGATGCGTTGACGAAGGCGGCTTTAGGTTTTAGAGTGTGTGAAGTGGCGGTTTGCTTGATTTCGTTTTCAGTTATGGCGTCTGATAAGACTCAGGGTTGGAGCGGCGACTCCTTTGATCGTTACAAGGAATACAGGTACTGCCTCACTGTGAATATAATTGCATTCGTGTATGCGGCATTTCAAGCATTTGATCTTGTCTTTACTCTAATCAAGAAGAACCATATGATACGTCATCAGTTTCGTTGTTATTTTGACTTCTTCATGGATCAGGTATTGGCATATCTTCTCATATCATCGTCTTCCTCAGCCGCAACGCGTGTTGACGATTGGCAATCGAATTGGGGAAAAGACGAGTTCACGCAGATGGCCAGTGCATCGGTCAGCATGTCCTTCCTTGCCTTTGTTGCTTTTGCTTTTAGTTCACTTATCTCTGGTTACAACCTTTGTACACGCGATCCTGCATGA 4209 45.17 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLESGSGLEAAENGSAHDTTVLETERSPVRPMSLNLSTRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMWMLVHLEDKRNEYIFLNPFLGMMRLVTRTNQDKNNKSKNKKKGRSREGKNGEVCEMGVANTSWVAGQAIPMLQFSPFCCFDLSPKKSNDSKLIMNWGCSIPNQPKLSITSTRNPRNSALFCRCSGNGSTSDSNSNSSSSSSSSSLEWDWVRWNRYFSEMEQAESFASVLKFQLEEAVEKEDFEEAAKLKLAIAETTQKDSVAEIMNQLKSAIEEERYQDASMLCKCTGSGLVGWWVGYSQDSDDPFGRLIRITPGVGRFIGRGYSPRQLVTASPGTPLFEIFIVKDDEERYVMQVVYLQRSKGNSKISTSPPSEPSNSPSTSGVKNQAAVDIAENEATKEPSEEKGVTVEGATEEGIKGVINFLKDKIPGLKVKVTNINVSKEVIEDANSVKQLMQEDSEKTETGGNSDDEMDKLDEIQPEAVSLGENSDASDDEKDLDMKLYIGGVVHNSEETPTKEEFVRHPAYIQDMDRDSFVLHIPGRGLDLDAAENKVPKVKVAALAAQGVSELMPADVAKAFWGVDKVSPKISRNVREIVKLAVSQAQKRSKLSEYTTFNRITTSRGDLDPFDGLYVGAFGPYGTEVVQLRRKFGHWNDLDDKDETSDMEFFEYVEAVKLTGDLNIPAGQIIFRAKIGRVNRTANRGMYPDELGVVASYKGQGRIAEFGFRNPQWVDGELLQLNGRGIGPYVKGADLGLLHVVPEHSFLLPDNSKAIVVVDVVDKSTQFSPLPSPYAGSRKPPENANFTGDRSTSSKVMFNRAMKEEVPQSVTKVGPAAGGGEETGGGGGGGGGRSPVKQMAPMSRRSKDDALTKAALGFRVCEVAVCLISFSVMASDKTQGWSGDSFDRYKEYRYCLTVNIIAFVYAAFQAFDLVFTLIKKNHMIRHQFRCYFDFFMDQVLAYLLISSSSSAATRVDDWQSNWGKDEFTQMASASVSMSFLAFVAFAFSSLISGYNLCTRDPA 1402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28402161 28420853 + CmPI595203_06g017440.1 Cmu06g1744 419404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1744 1402 Pfam Casparian strip membrane protein domain 1250 1384 IPR006702 -
Cmu06g1744 1402 SUPERFAMILY RING/U-box 217 284 - -
Cmu06g1744 1402 Pfam Ring finger domain 234 276 IPR001841 -
Cmu06g1744 1402 MobiDBLite consensus disorder prediction 472 492 - -
Cmu06g1744 1402 PANTHER PROTEIN EXECUTER 1, CHLOROPLASTIC 557 1147 IPR044680 GO:0000304(PANTHER)|GO:0010343(InterPro)|GO:0042651(PANTHER)
Cmu06g1744 1402 MobiDBLite consensus disorder prediction 745 770 - -
Cmu06g1744 1402 SMART ring_2 235 275 IPR001841 -
Cmu06g1744 1402 Pfam Cyclin D1 binding domain 998 1130 - -
Cmu06g1744 1402 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cmu06g1744 1402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cmu06g1744 1402 MobiDBLite consensus disorder prediction 336 362 - -
Cmu06g1744 1402 MobiDBLite consensus disorder prediction 1169 1191 - -
Cmu06g1744 1402 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cmu06g1744 1402 MobiDBLite consensus disorder prediction 1210 1239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1744 Cmu-Chr6:28402161 Cmu10g1497 Cmu-Chr10:9995133 1.10E-08 dispersed
Cmu09g1579 Cmu-Chr9:30040861 Cmu06g1744 Cmu-Chr6:28402161 2.00E-89 transposed
Cmu01g1265 Cmu-Chr1:25235381 Cmu06g1744 Cmu-Chr6:28402161 1.40E-162 wgd
Cmu06g1744 Cmu-Chr6:28402161 Cmu09g1817 Cmu-Chr9:34337447 9.90E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1744 - - - 0.0