Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1745 ATGCGAAAATCGGCAGTTGCAATTGCAGCCGTCGCCGGTGGGAGAGAGGTCGCGATTCTGCGTTCTCTGCTGATTTTGAACAATTGTGAGATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGCTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGAAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACCACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTTGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCATGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTGCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCTTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGACTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAATGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATATTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTTGTCATCTACTCTTGTTGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCGAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCGTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACAGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATCTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTCAATTCCGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAAAGGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGCTCCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAACCACAACCCTCGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCTGGTGGTGAATCTCGTGTGGGTACTGTTGCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCTTAGCTTCCAGTCAGCTACACCTGCCACACCTATTGAACCCTCCGTTGCACCGCATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGACGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGCCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTTTGACTTACGAGAATGATAACCCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACTGAGATCGACAATAATGAGTTGAAAGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAGCCACCACCTGTCGCATTGCCAGAAGCTGCCGAAGCCATCCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGTTTACTGACGAACAGTTAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAAGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGATAGCAGCTCTGGAGGACAATGA 4668 44.69 MRKSAVAIAAVAGGREVAILRSLLILNNCEMPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSEDKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYDSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKGFFHSPFFRSPTASTRYRVFVSATMVEKPSSLSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAVLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGAPMAATQSAPPSSNDDNSQNSAPAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPSTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAIGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDLSFQSATPATPIEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPAFFPQSQDDAGLNSLVQNNGLTYENDNPSVPWWQKRNVNITEIDNNELKVGSSNGLSAEKPVQRAWVPPQPPPVALPEAAEAIRRPKPTIQKEQFTDEQLATQPNVTDELQKATKISESGGAIDYENLGVSSSEIQVEDSSSGGQ 1555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28430426 28444896 + CmPI595203_06g017450.1 Cmu06g1745 419405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1745 1555 CDD S1_Rrp40 858 943 IPR037319 GO:0003723(InterPro)
Cmu06g1745 1555 SMART tpr_5 349 382 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 473 506 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 515 548 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 641 674 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 558 591 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 599 632 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 391 424 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 306 339 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 SMART tpr_5 683 716 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 FunFam Exosome complex component RRP40 861 941 - -
Cmu06g1745 1555 Gene3D - 793 860 - -
Cmu06g1745 1555 SUPERFAMILY Ribosomal L27 protein-like 797 857 - -
Cmu06g1745 1555 Pfam Peroxisomal membrane protein PEX14-like, central 1187 1305 IPR054154 -
Cmu06g1745 1555 Gene3D - 865 941 IPR012340 -
Cmu06g1745 1555 CDD KH-I_Rrp40 945 1023 IPR049469 -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 186 200 - -
Cmu06g1745 1555 Pfam Exosome complex component RRP40, S1 domain 859 941 - -
Cmu06g1745 1555 Pfam Pex14 N-terminal domain 1090 1134 IPR006785 -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 1374 1399 - -
Cmu06g1745 1555 FunFam Exosome complex exonuclease RRP40 795 860 - -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 1134 1167 - -
Cmu06g1745 1555 Gene3D K Homology domain, type 1 942 1025 IPR036612 GO:0003723(InterPro)
Cmu06g1745 1555 Gene3D - 1082 1148 IPR036388 -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 111 154 - -
Cmu06g1745 1555 Pfam KH domain 946 994 IPR004088 GO:0003723(InterPro)
Cmu06g1745 1555 FunFam Peroxisomal membrane protein PEX14 1082 1144 - -
Cmu06g1745 1555 Gene3D Tetratricopeptide repeat domain 461 639 IPR011990 GO:0005515(InterPro)
Cmu06g1745 1555 SUPERFAMILY TPR-like 259 718 IPR011990 GO:0005515(InterPro)
Cmu06g1745 1555 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 945 1027 IPR036612 GO:0003723(InterPro)
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 1139 1167 - -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 98 245 - -
Cmu06g1745 1555 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 762 - -
Cmu06g1745 1555 SUPERFAMILY Nucleic acid-binding proteins 857 949 IPR012340 -
Cmu06g1745 1555 Coils Coil 724 744 - -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 53 72 - -
Cmu06g1745 1555 Pfam Tetratricopeptide repeat 406 456 - -
Cmu06g1745 1555 Pfam Tetratricopeptide repeat 643 709 - -
Cmu06g1745 1555 Pfam Tetratricopeptide repeat 471 547 - -
Cmu06g1745 1555 Gene3D Tetratricopeptide repeat domain 268 460 IPR011990 GO:0005515(InterPro)
Cmu06g1745 1555 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 Gene3D Tetratricopeptide repeat domain 653 752 IPR011990 GO:0005515(InterPro)
Cmu06g1745 1555 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515(InterPro)
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 1036 1056 - -
Cmu06g1745 1555 MobiDBLite consensus disorder prediction 1033 1088 - -
Cmu06g1745 1555 FunFam exosome complex component RRP40 942 1025 - -
Cmu06g1745 1555 Pfam Family of unknown function (DUF5572) 1355 1403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1745 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1745 Cmu-Chr6:28430426 Cmu07g1121 Cmu-Chr7:26251947 8.60E-196 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48