Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1753 ATGGTTCACAGTCACAGTACCAGTACCACGGCCTACGCCCTACCCCTCTCTCTCTCTACGCCTCTAAATAATTCTTCCATTTTTCTCTCTCCGCTGTCGACCATGGCGGATCTTTACGGACTCCATCCCCTCGCTGATAACTCTTACCAGTCATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCAATGGCTTCTGCAGATTATTCTCATCTACTTCCTGCTTTTGAATCGGAATATTTGCGGACGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCTAGACCAAAACAACCGTGGAAGTGATATCGGCGAAGAAATTTCCGGCGTTTCAAATTGCTTGGGTGTCGATCCCGAACTCGATGAGTTCATGGAAACATACTACAGGATACTAGCCAAATACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGATGAAACTGCTCCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAGACTCTCTTGTGGTTCCGGGAAATGAAGATCGCGAGCTGAAGGATCGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACCAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAAACAGATCCTGCTTCACTGGTGGAACAGCCATTCCCAGTGGCCATATCCCACTGACACAGAAAAGGTTGAGTTGGCCGAGTCGACAGGCCTAACCCGAAAACAAATAAACAACTGGTTCATAAACCAGAGGAAACGGCATTGGAAATCACCATAA 993 47.83 MVHSHSTSTTAYALPLSLSTPLNNSSIFLSPLSTMADLYGLHPLADNSYQSSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRTVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADILDQNNRGSDIGEEISGVSNCLGVDPELDEFMETYYRILAKYELDLSQSFMEASSFLNNMGMQLNVLCNNDETAPKENISAGEVELQDSLVVPGNEDRELKDRLLREYGGHISSLKQEFSKTKKKANLPREAKQILLHWWNSHSQWPYPTDTEKVELAESTGLTRKQINNWFINQRKRHWKSP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28568968 28577223 + CmPI595203_06g017530.1 Cmu06g1753 419413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1753 330 SMART KNOX2_2 165 216 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu06g1753 330 Gene3D - 271 330 - -
Cmu06g1753 330 Pfam KNOX2 domain 169 215 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu06g1753 330 CDD homeodomain 270 329 IPR001356 GO:0003677(InterPro)
Cmu06g1753 330 Pfam KNOX1 domain 116 154 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu06g1753 330 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677(InterPro)
Cmu06g1753 330 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677(InterPro)
Cmu06g1753 330 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu06g1753 330 SUPERFAMILY Homeodomain-like 268 328 IPR009057 -
Cmu06g1753 330 ProSitePatterns 'Homeobox' domain signature. 304 327 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu06g1753 330 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 156 328 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu06g1753 330 SMART HOX_1 268 330 IPR001356 GO:0003677(InterPro)
Cmu06g1753 330 SMART KNOX1_2 114 158 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu06g1753 330 SMART ELK_2 246 267 IPR005539 GO:0003677(InterPro)
Cmu06g1753 330 Pfam ELK domain 246 267 IPR005539 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1753 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1753 Cmu-Chr6:28568968 Cmu08g1619 Cmu-Chr8:27880451 1.20E-46 dispersed
Cmu05g2599 Cmu-Chr5:34673380 Cmu06g1753 Cmu-Chr6:28568968 1.50E-70 wgd
Cmu06g1753 Cmu-Chr6:28568968 Cmu08g1715 Cmu-Chr8:28597193 1.70E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000818 2 3 3 3 3 3 4 2 2 3 3 2 3 2 3 3 4 4 4 3 3 3 2 4 4 3 3 3 3 3 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6451 PF03791 KNOX2 1.10E-17 No_clan Cmu TF