Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1754 ATGGCGACTCAACGTCTGAGTGTGACACCGCCACTTGCTTGGCGTTCGCATTTCATCTTTTACTTATCCGTAATGTCAGGCATCGACGTTGATATGACTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAGACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGGTAGCCTCTAAAGACATTCATGACATGATTGCTGATCAAGACAACACTTCCCAGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGATCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGCGAGAAGATCGTCCTTAAGCAATTTGACACGTGATTTTTTTCGGCATGGCAATGAACATTCAAACTCGGACAATAACGAAACTTCCGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGGTATTGCCGACCATGTAAGTCGTTTTATTTCCTTGGTTGTTCCTCCTGTTGGTCTTGGCATCAGATTGCTCTTTGGCTGTGGCTCTCGCTCTCTCGCTTTCTGGCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTGGCTCTCTCGCTCTCTGGCTCTCTCGCTCTCTGGCTCTCTCGCTCTCTGGCGCTCTCGCTCTCTGGCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCCCGCTCTCGCGCTCCCGCTCCCGCTCTCCCTCCCTCTCGGGCTCCCGCTCCCGCTCTCCCTCCCTCTCGGGCTCCCGCTCCCGCTCTCGCTCCCGCTCGGGCTCCCGCTCGGGCTCCCGCTCTCGCTCTCTGGCTCTCGCTTTCGCTCTCTGGCTCTCGCTTTCGCTCTCTGGCTCTCCGGCTCCAGCCCTCGCCCTCGCCCTCGGCCGGGCCCTTGCCTCGCTCTTCGGCGCGCTTGCTCCCGCTTTTGCTTTGGGCTCCCGCTCTTGCTCTCTTGCTCTCGATCTTGCTCTCACTCTTTGGATCTCACTCCTGCTCTTTGGATCTCAATCACGATCTCGCTCTCTGA 2184 47.57 MATQRLSVTPPLAWRSHFIFYLSVMSGIDVDMTVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKDYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKVASKDIHDMIADQDNTSQRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEELNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGITTEVGKIPDRKPHLQTTRRARRSSLSNLTRDFFRHGNEHSNSDNNETSVDLNSKLLHSAWHPSENLIACAAGSGIADHVSRFISLVVPPVGLGIRLLFGCGSRSLAFWLSRSLALSLSGSLALWLSRSLALSLSGALALWRSRSRSRSRSRSRSRAPAPALPPSRAPAPALPPSRAPAPALAPARAPARAPALALWLSLSLSGSRFRSLALRLQPSPSPSAGPLPRSSARLLPLLLWAPALALLLSILLSLFGSHSCSLDLNHDLAL 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28585034 28595678 + CmPI595203_06g017540.1 Cmu06g1754 419414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1754 727 Pfam WD domain, G-beta repeat 250 285 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 149 177 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 285 312 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 370 397 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 70 90 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 342 369 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 424 450 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 257 284 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 313 341 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 423 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 509 538 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cmu06g1754 727 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 133 147 IPR018067 -
Cmu06g1754 727 Gene3D - 343 536 IPR015943 GO:0005515(InterPro)
Cmu06g1754 727 Gene3D - 98 342 IPR015943 GO:0005515(InterPro)
Cmu06g1754 727 MobiDBLite consensus disorder prediction 620 640 - -
Cmu06g1754 727 SUPERFAMILY WD40 repeat-like 64 534 IPR036322 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 420 451 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 56 91 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 355 393 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 289 336 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 246 285 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 SMART WD40_4 133 173 IPR001680 GO:0005515(InterPro)
Cmu06g1754 727 MobiDBLite consensus disorder prediction 608 641 - -
Cmu06g1754 727 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 43 533 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(PANTHER)|GO:0019888(InterPro)
Cmu06g1754 727 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 61 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1754 K04354 - - csv:101206601 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1754 Cmu-Chr6:28585034 Cmu07g1338 Cmu-Chr7:28678469 8.30E-125 dispersed
Cmu06g1754 Cmu-Chr6:28585034 Cmu09g0047 Cmu-Chr9:736987 5.00E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36