Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1772 ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 44.81 MVGSVGLCEPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28767374 28770363 - CmPI595203_06g017720.1 Cmu06g1772 419432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1772 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Cmu06g1772 240 Coils Coil 145 172 - -
Cmu06g1772 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Cmu06g1772 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1772 Cmu-Chr6:28767374 Cmu11g1129 Cmu-Chr11:21248884 8.70E-47 dispersed
Cmu09g0064 Cmu-Chr9:868298 Cmu06g1772 Cmu-Chr6:28767374 1.10E-22 transposed
Cmu01g1297 Cmu-Chr1:25547676 Cmu06g1772 Cmu-Chr6:28767374 1.80E-51 wgd
Cmu10g2152 Cmu-Chr10:27552403 Cmu06g1772 Cmu-Chr6:28767374 3.60E-56 wgd
Cmu06g1772 Cmu-Chr6:28767374 Cmu09g1851 Cmu-Chr9:34644362 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6453 PF03195 LOB 5.30E-42 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1772 - - - 0.0