Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1786 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTTTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGAGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTACAACATAAGAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGCGTAGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGCATCATACACCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCCGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTAATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTGGTTTTAGTTATGTAGTATCACAGCCTAAGCCTTACATCATCATGGTAGAATGGAAGATCATCCTGATGCTTGGTTGTAAGATCTTGAAGATTCAACTTTCAAATCATTGCTACCAGTAA 1152 43.84 MEAGSRFYSATDEFRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGGFSYVVSQPKPYIIMVEWKIILMLGCKILKIQLSNHCYQ 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28879435 28881964 + CmPI595203_06g017860.1 Cmu06g1786 419446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1786 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 FunFam Kinase suppressor of Ras 1 16 106 - -
Cmu06g1786 383 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Cmu06g1786 383 MobiDBLite consensus disorder prediction 316 339 - -
Cmu06g1786 383 PANTHER SERINE-THREONINE PROTEIN KINASE 25 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu06g1786 383 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 CDD STKc_MAP3K-like 33 287 - -
Cmu06g1786 383 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1786 383 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Cmu06g1786 383 FunFam serine/threonine-protein kinase HT1 108 307 - -
Cmu06g1786 383 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Cmu06g1786 383 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1786 Cmu-Chr6:28879435 Cmu11g1140 Cmu-Chr11:21537769 1.20E-61 dispersed
Cmu01g1869 Cmu-Chr1:32275019 Cmu06g1786 Cmu-Chr6:28879435 2.20E-84 transposed
Cmu10g2969 Cmu-Chr10:35915022 Cmu06g1786 Cmu-Chr6:28879435 4.20E-116 transposed
Cmu10g2140 Cmu-Chr10:27410753 Cmu06g1786 Cmu-Chr6:28879435 3.00E-157 wgd
Cmu06g1786 Cmu-Chr6:28879435 Cmu09g1858 Cmu-Chr9:34711557 2.60E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75639 PF07714 PK_Tyr_Ser-Thr 4.10E-58 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1786 - - - 0.0