Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1792 ATGGCAATCCGAATTATTTTGGCTGCGCAGGAATCTTCCTGGAAATTAACCATCGCCAAATTTGGGGTTGTTTTATTTTCTGTGGGGATTGGATTGCCTCTTGGAAATTTGGGTTTTCTTGCAAAAAGTTCTTGTGAAGTGATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGGCGGATTTCGTCTAGTCGGTCGAACTCGCAGCAGCGGAGTCATTACGGTTATCCACAGTCACCATATGCTCAATCAAGAAGCACGCCGCAGTATCGGTATGCACCTTCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTCGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGACAAACATTATCTTCCTTCGACGAGGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTCGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGAATACCCCTTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCATTTGATAACTTCCAATTTGTAAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGAAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCTACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAGAAAACCTCAAACTCAAGCAGTTCTCGCCCAATGGCGCCCTCATTTGGTGGAGCTGCTCCTGCCCGAACTGCACCTCCTCTTAGTTCGGTTTCTGATGCTCATGCTTGTCCAATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGCGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGCAGTGCCCCATATGCCGCAGCTTCATTGACACTAGGATAAAGCTTTATTAG 1440 44.79 MAIRIILAAQESSWKLTIAKFGVVLFSVGIGLPLGNLGFLAKSSCEVMGGKSSKHGSSRRISSSRSNSQQRSHYGYPQSPYAQSRSTPQYRYAPSTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPMAPSFGGAAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQQCPICRSFIDTRIKLY 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28920012 28923684 + CmPI595203_06g017920.1 Cmu06g1792 419452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1792 479 MobiDBLite consensus disorder prediction 55 103 - -
Cmu06g1792 479 SUPERFAMILY vWA-like 141 323 IPR036465 -
Cmu06g1792 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 479 IPR013083 -
Cmu06g1792 479 MobiDBLite consensus disorder prediction 50 108 - -
Cmu06g1792 479 Pfam Copine 164 377 IPR010734 -
Cmu06g1792 479 Pfam Zinc finger, C3HC4 type (RING finger) 434 474 - -
Cmu06g1792 479 SMART VWA_4 139 342 IPR002035 -
Cmu06g1792 479 ProSiteProfiles Zinc finger RING-type profile. 436 469 IPR001841 -
Cmu06g1792 479 PANTHER COPINE FAMILY PROTEIN 1 43 479 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cmu06g1792 479 MobiDBLite consensus disorder prediction 397 412 - -
Cmu06g1792 479 Coils Coil 108 128 - -
Cmu06g1792 479 SUPERFAMILY RING/U-box 433 474 - -
Cmu06g1792 479 MobiDBLite consensus disorder prediction 385 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1792 K16280 - - csv:101221610 788.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1474 Cmu-Chr1:28269717 Cmu06g1792 Cmu-Chr6:28920012 1.30E-120 dispersed
Cmu02g1876 Cmu-Chr2:32680392 Cmu06g1792 Cmu-Chr6:28920012 1.20E-17 dispersed
Cmu06g1792 Cmu-Chr6:28920012 Cmu11g1143 Cmu-Chr11:21608062 2.40E-19 dispersed
Cmu01g2057 Cmu-Chr1:33579629 Cmu06g1792 Cmu-Chr6:28920012 5.50E-121 transposed
Cmu10g2133 Cmu-Chr10:27360837 Cmu06g1792 Cmu-Chr6:28920012 1.80E-157 wgd
Cmu05g2652 Cmu-Chr5:35106305 Cmu06g1792 Cmu-Chr6:28920012 1.30E-162 wgd
Cmu06g1792 Cmu-Chr6:28920012 Cmu09g1865 Cmu-Chr9:34783282 2.10E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136