Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1799 ATGCCTTCACCTTCCTCTAAACTCCTTCCACTCTTGGCTTTTCTCTCCGTTCTTCTCCGCGTCCATGCCCGATTGAACCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAATGACTTGGGCATTGACGGTCAACTCTCCCCCTCCCCATGCCACAACGCCGGTGTGTTCTGCGAGCGGCGGCTCTCCGACAACGGCACTTATGTTTTGAGGATCACCAGGCTCATTTTCAACTCCAAAGGTCTCACTGGTTCTCTTTCTCCGGCTATCGGGCGGCTCACGGAGTTGAAAGAGCTTACGGTTTCTAACAATCACCTCGTTGACCAAGTACCTCCCCAAATCGTTGACTGCCGGAAACTGGAAATTCTCGATCTCCAAAGCAACCAATTTTCTGGAAAAGTTCCGTCTGGATTGTCCTCACTGATTCGCCTTCGAGTCATCGCTCTTTCGTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGCATTTCCCCAACTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACAGGGAAGATCCCAGCTTCAATTCGTTCATTTCGCAATCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGTTCAGCCCCTATCGTGAAGGGTGTTGAGTTCTATTCGGCTACAGAAGTTCCCAAGCGTTATAAGTTAGCTGAGAATTCCAGTACGAAAGGCACGCACAGGGCCGCCGCTACAGCGCCAACTTCGAGTGCTCAAGCTCCATCTCCCGTGCCACCCCCTACTCATAAGCATCGGAAGAATGAAGCAAAGAAGGTAATTTCTTGGATACTTGGGTTCCTCGCTGGAGCAATTGCTGGGAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTCGTCATAGCAGCTATAAAAGGTGGAAGCAAGAATTCAGGTCCCTCAATCTTTGCTCCTAAGTTGATAAAACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAAGCTGAATTACCAGAAAAAAGTGGGAAAATGTTTGCAATAAAGAAGATAAGTCAACCCCCAAAGGATGCGGCCGAGTTAGCTGACGAGGACAGCAAGCTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAAAACTGTGGGCGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCCCATGTCCCTCGTCCTGATTGTCACTACCTTGTGTATGAATTGATGAAGAATGGCAGCTTGCAAGATATGTTGAATCAGGTTTCAGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAAAATTGCTCTTGGAGTTGCATCTGGGCTTGAGTATCTTCACATGAATCATACCCCACGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTCGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATAACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACAATGAAGTTCACTGATAAATGTGATATATACGGCTTTGGGGTTCTGCTAGGTGTCTTGGTGATCGGGAAACTCCCATCTGATCAGTTTTTCCAAAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCGGATAATCCTAGGGGAGCCATCGATCCAAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTTTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAATAGCAAGGATGTCAGATGCATGCTGTCCCAAATCAAGCACGATGTACCTGAAACTCCCTCTCAAAATGTCTAA 1914 46.24 MPSPSSKLLPLLAFLSVLLRVHARLNLDPSDLRAFSIIKNDLGIDGQLSPSPCHNAGVFCERRLSDNGTYVLRITRLIFNSKGLTGSLSPAIGRLTELKELTVSNNHLVDQVPPQIVDCRKLEILDLQSNQFSGKVPSGLSSLIRLRVIALSSNKFSGSLDFLKHFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSAPIVKGVEFYSATEVPKRYKLAENSSTKGTHRAAATAPTSSAQAPSPVPPPTHKHRKNEAKKVISWILGFLAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKISQPPKDAAELADEDSKLMSKKMRQIKSEIKTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHITASNVAGTVGYIAPEYHQTMKFTDKCDIYGFGVLLGVLVIGKLPSDQFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETPSQNV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28954648 28956561 + CmPI595203_06g017990.1 Cmu06g1799 419459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1799 637 Gene3D Ribonuclease Inhibitor 17 161 IPR032675 -
Cmu06g1799 637 SMART serkin_6 333 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1799 637 FunFam Leucine-rich repeat receptor-like protein kinase 425 632 - -
Cmu06g1799 637 Gene3D Ribonuclease Inhibitor 162 222 IPR032675 -
Cmu06g1799 637 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cmu06g1799 637 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
Cmu06g1799 637 MobiDBLite consensus disorder prediction 233 249 - -
Cmu06g1799 637 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
Cmu06g1799 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 254 627 IPR051564 GO:0016020(PANTHER)
Cmu06g1799 637 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Cmu06g1799 637 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Cmu06g1799 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1799 637 MobiDBLite consensus disorder prediction 230 264 - -
Cmu06g1799 637 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1799 637 SUPERFAMILY L domain-like 48 206 - -
Cmu06g1799 637 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1799 637 FunFam Leucine-rich repeat receptor protein kinase EMS1 69 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1799 Cmu-Chr6:28954648 Cmu05g0896 Cmu-Chr5:8162296 6.10E-55 dispersed
Cmu06g1799 Cmu-Chr6:28954648 Cmu07g1648 Cmu-Chr7:31814326 6.30E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75640 PF00069 Pkinase 1.20E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1799 - - - 0.0