Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1816 ATGCCAAGTTCTGTTCAGCACATAACTTTTTGCTGCCGTAAGAAGTCAAATAGACACGTGGTCGACGTCCCCATCAAACTTTCCTCACTCGCGGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGGGTTTCGTTTCGAGGGGTTTATCTTGTTCTTGGATTAGATTCTGCCTTTGCTGTATTTCGATTTTTCTCTCCTTCTCGTGTTTTTCTTTCGTTTTCTTTTTGCTTCTCCCAAAGGCGGGAGCGGAAGGATGAAATAGTGAATTTGTTCCACGAGCTTGAGATTCCCACAAATGGCAACCCTTGCGTTCATTGGTCGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAACTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCCGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTGAAGTTAGAACTTGAACAGGTTCGATTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGATTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGTAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTATTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAACGCGATGACTTACAACCCTCCTGGGAATGACGTTCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAGCTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATACGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATACCGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTATCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGGGATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAGGAACTTGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCATCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGTTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2727 43.86 MPSSVQHITFCCRKKSNRHVVDVPIKLSSLAGFSSLRGLVRIASDGLCSRSRVSFRGVYLVLGLDSAFAVFRFFSPSRVFLSFSFCFSQRRERKDEIVNLFHELEIPTNGNPCVHWSTTEGLRCPDKLLGTNPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLPVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYTMEKQKRTKAEPCVVELHTESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDRKQNELGDLEIGNYEENGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29085455 29092469 - CmPI595203_06g018160.1 Cmu06g1816 419476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1816 908 FunFam Transcription factor GTE4 313 448 - -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 447 484 - -
Cmu06g1816 908 Coils Coil 239 259 - -
Cmu06g1816 908 PANTHER TRANSCRIPTION FACTOR GTE8 215 887 IPR052442 -
Cmu06g1816 908 Gene3D - 319 454 IPR036427 GO:0005515(InterPro)
Cmu06g1816 908 CDD Bromo_plant1 338 435 IPR037377 -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 575 653 - -
Cmu06g1816 908 Coils Coil 760 808 - -
Cmu06g1816 908 Gene3D - 487 563 IPR038336 -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 836 908 - -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 850 869 - -
Cmu06g1816 908 SUPERFAMILY Bromodomain 317 443 IPR036427 GO:0005515(InterPro)
Cmu06g1816 908 MobiDBLite consensus disorder prediction 687 722 - -
Cmu06g1816 908 ProSiteProfiles NET domain profile. 482 563 IPR027353 -
Cmu06g1816 908 PRINTS Bromodomain signature 384 402 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 PRINTS Bromodomain signature 368 384 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 PRINTS Bromodomain signature 402 421 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 PRINTS Bromodomain signature 352 365 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 Pfam Bromodomain extra-terminal - transcription regulation 492 553 IPR027353 -
Cmu06g1816 908 SMART bromo_6 330 440 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 MobiDBLite consensus disorder prediction 446 484 - -
Cmu06g1816 908 ProSiteProfiles Bromodomain profile. 349 421 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 MobiDBLite consensus disorder prediction 689 716 - -
Cmu06g1816 908 Pfam Bromodomain 341 425 IPR001487 GO:0005515(InterPro)
Cmu06g1816 908 MobiDBLite consensus disorder prediction 624 652 - -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 747 807 - -
Cmu06g1816 908 MobiDBLite consensus disorder prediction 275 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1816 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2357 Cmu-Chr1:35648005 Cmu06g1816 Cmu-Chr6:29085455 5.70E-41 dispersed
Cmu06g1816 Cmu-Chr6:29085455 Cmu10g1766 Cmu-Chr10:21777389 7.80E-48 dispersed
Cmu01g2515 Cmu-Chr1:37032967 Cmu06g1816 Cmu-Chr6:29085455 1.10E-10 transposed
Cmu05g1395 Cmu-Chr5:17836249 Cmu06g1816 Cmu-Chr6:29085455 1.10E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47