Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1820 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGTCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTCCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTTAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAATGGCGAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGATAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAAATCGTAAATGGAGTAAACGGGGAGGAGGAATCTGGCAAGAAGAAGAAGAAAAAGAAGAGTAAGGATGAAAATAAGGGGGATGATCATGTTGCTGCAGAAGATGCTGTAGAAATGCCCCTTGTGGCTGTTTTTGGTCTCCGACCTCTATATTTTTGTCCATCAGCAAAACTTATGCCAATATGCACGGTTGAAGAAGAAGAAGACGACGACGACGACGACGACCAAACAGCCATGGCCAGTAGTTCTGGATCAGCGAGCTTAGAAGATGTCCCTTCCATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAGTACTGCTTGTGTCACTTGGCAACTGGAGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGCAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGATGCTAAAATTGATAAGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAAGAAGGAGATTGTCGCAGATCTTCAAGCAGAGAAGCCTCCCAAACAGGGCCAGAGCGATAGCACAACAGCAAGTAGGTCGTCACCGTCGAGACATTCGTCGTCATATATTTCTTCTTCTGGTTTCCACACTACCAAAAATATTTCCCAGAAATACTAG 2571 44.61 MTSTYLLYESASGYALFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANVNGEVEDRPSATENGDVSEDTKSEKKKKKEKRKLDRETEEQQQAAEIVNGVNGEEESGKKKKKKKSKDENKGDDHVAAEDAVEMPLVAVFGLRPLYFCPSAKLMPICTVEEEEDDDDDDDQTAMASSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKQAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQDAKIDKVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKEIVADLQAEKPPKQGQSDSTTASRSSPSRHSSSYISSSGFHTTKNISQKY 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29119712 29128747 - CmPI595203_06g018200.1 Cmu06g1820 419480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1820 856 Gene3D Nop domain 300 412 IPR042239 -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 434 537 - -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 818 856 - -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 514 537 - -
Cmu06g1820 856 Coils Coil 485 508 - -
Cmu06g1820 856 PRINTS Adenylate kinase signature 621 634 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 PRINTS Adenylate kinase signature 777 792 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 PRINTS Adenylate kinase signature 698 714 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 PRINTS Adenylate kinase signature 649 663 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 PRINTS Adenylate kinase signature 794 808 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 NCBIfam adenylate kinase 619 820 IPR006259 GO:0004017(InterPro)|GO:0005524(InterPro)|GO:0016776(InterPro)
Cmu06g1820 856 Hamap Adenylate kinase [adk]. 618 830 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 Gene3D - 142 299 - -
Cmu06g1820 856 ProSitePatterns Adenylate kinase signature. 698 709 IPR033690 -
Cmu06g1820 856 FunFam Nucleolar protein 56 141 299 - -
Cmu06g1820 856 FunFam Nucleolar protein 56 300 412 - -
Cmu06g1820 856 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cmu06g1820 856 FunFam Adenylate kinase mitochondrial 618 828 - -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 434 451 - -
Cmu06g1820 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 807 IPR027417 -
Cmu06g1820 856 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 531 IPR045056 GO:0030515(InterPro)|GO:0030515(PANTHER)|GO:0031428(InterPro)|GO:0031428(PANTHER)|GO:0032040(PANTHER)|GO:0032040(InterPro)
Cmu06g1820 856 CDD ADK 619 819 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cmu06g1820 856 Pfam Adenylate kinase, active site lid 744 779 IPR007862 GO:0004017(InterPro)
Cmu06g1820 856 SMART NOSIC_2 171 223 IPR012976 -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 572 594 - -
Cmu06g1820 856 Gene3D - 591 825 IPR027417 -
Cmu06g1820 856 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cmu06g1820 856 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cmu06g1820 856 Pfam Adenylate kinase 622 807 - -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 811 856 - -
Cmu06g1820 856 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cmu06g1820 856 MobiDBLite consensus disorder prediction 459 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1820 K14564 - - csv:101216223 961.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1820 Cmu-Chr6:29119712 Cmu11g0355 Cmu-Chr11:4035183 9.10E-30 dispersed
Cmu02g1622 Cmu-Chr2:30026763 Cmu06g1820 Cmu-Chr6:29119712 1.00E-90 transposed
Cmu03g0966 Cmu-Chr3:4275618 Cmu06g1820 Cmu-Chr6:29119712 2.00E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45