Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1831 ATGGCGGCGGCTGCTTCCCCATGCGCCTCCAAATCCTTCTCCAAACCCTCCTCCTTCTCCCTTCCTAAACCCTTCTCCAGATTTGATCTTTCATTTTCCCCTCTTCCTCACAATCCCACCTTCCGCCGTCCTCTTCGCATCTGCAGCTCCTCTCTCTCCAATCCTTCCCCCAAACCCTCTTCCACCGCCGCCTCCGCCGCTGCCGTCGACACTTCCACCATCGCCAGCCCTGAGATTTTCGTCTCCCGATTTGCCGCTGATGAACCGAGAAAAGGCGCCGATATCCTCGTCGAGGCTCTCGAGCGCCAAGGCGTCACCAATGTCTTCGCTTACCCCGGCGGCGCGTCCATGGAGATCCATCAGGCCCTCACCCGCTCTTCAATTATCCGTAACGTTCTCCCTCGCCACGAGCAGGGCGGCGTATTCGCCGCCGAGGGTTACGCTCGCTCCTCTGGCCTTCCCGGCGTTTGCATTGCAACTTCCGGCCCCGGTGCCACTAATCTGGTCAGCGGCCTTGCCGACGCCCTCCTCGACAGCGTTCCATTGGTGGCCATTACAGGGCAAGTTCCGAGAAGAATGATCGGTACCGATGCGTTTCAGGAAACTCCCATTGTTGAGGTAACTCGCTCTATTACAAAGCACAACTATCTGGTTCTTGATGTAGATGACATTCCTAGGATTGTGAGCGAGGCATTTTTCCTCGCAATTTCTGGTCGACCTGGTCCTGTTCTTATTGATATTCCTAAGGACGTTCAGCAACAGCTCGCGGTTCCCAATTGGAATCAGCCCATGAAATTACCTGGTTACTTGTCTAGGTTACCTAAGCCTCCAATTGACTCTCATTTGGAACAAATTGTGCGATTGGTATCTGAATCTAAGAAGCCTGTTCTTTACGTGGGTGGAGGGTGTTTGAATTCCTCGGAGGAGCTGCGGCGTTTTGTCAAGCTCACCGGGATTCCGGTGGCCAGCACTCTCATGGGTCTCGGGGCTTATCCTTGCTCCGATGAATTGTCTCTGCAAATGCTGGGAATGCATGGGACTGTCTATGCCAACTATGCTGTGGATAAATCTGATCTGTTGCTTGCATTTGGAGTGAGATTTGATGACCGTGTGACAGGGAAGCTCGAGGCCTTTGCAAGCCGTGCAAAAATCGTTCATATCGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAGCCCCATGTGTCGGTCTGTGGTGATGTAAAGTTGGCCTTACAGGGAATGAATCGTTTACTTGAGAAAACTGAGAAGCTTCACTTTGATTTCTCTGCGTGGAGAGAGGAGCTGAATGAGCAGAAATCAAAGTATCCATTGACTTTCAAAACATTTGATGAGGCCATTCCTCCACAGTATGCAATTCAACTTCTTGATGAGCTAACCAACGGCGAGGCCATCGTAAGCACAGGGGTGGGGCAGCATCAGATGTGGGCAGCTCAATTCTACAAGTACAAGAAGCCACGTCAGTGGTTAACCTCTGGAGGGTTAGGTGCAATGGGCTTTGGACTGCCAGCAGCCATGGGGGCAGCAGTAGCAAATCCCGATGCGGTGGTCATAGACATCGACGGGGACGGGAGTTTCATCATGAATGTCCAAGAACTGGCAACAATCAGTGTTGAGAAACTTCCAGTGAAGATCCTGCTGCTGAACAACCAGCATCTAGGCATGGTTGTGCAGTGGGAGGATCGGTTCTATAAAGCCAACAGAGCTCACACTTACCTGGGAGATCCATCAAACGAGACCGAGATATTCCCCAACATGTTGAAGTTTGCAGAGGCCTGCGGGATCCCAGCTGCCCGTGTGACGAAGAGGGCCGAGTTAAGAGCAGCAATGAAGAAGATGCTGGAAACAGAAGGGCCTTACTTGTTGGATGTGATTGTACCGCATCAGGAACATGTCCTGCCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATCACAGAGGGAGATGGAAGATCCGTATACTAA 1989 51.78 MAAAASPCASKSFSKPSSFSLPKPFSRFDLSFSPLPHNPTFRRPLRICSSSLSNPSPKPSSTAASAAAVDTSTIASPEIFVSRFAADEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVSEAFFLAISGRPGPVLIDIPKDVQQQLAVPNWNQPMKLPGYLSRLPKPPIDSHLEQIVRLVSESKKPVLYVGGGCLNSSEELRRFVKLTGIPVASTLMGLGAYPCSDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDVKLALQGMNRLLEKTEKLHFDFSAWREELNEQKSKYPLTFKTFDEAIPPQYAIQLLDELTNGEAIVSTGVGQHQMWAAQFYKYKKPRQWLTSGGLGAMGFGLPAAMGAAVANPDAVVIDIDGDGSFIMNVQELATISVEKLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSNETEIFPNMLKFAEACGIPAARVTKRAELRAAMKKMLETEGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSVY 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29244776 29246764 - CmPI595203_06g018310.1 Cmu06g1831 419491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1831 662 MobiDBLite consensus disorder prediction 1 21 - -
Cmu06g1831 662 Gene3D - 282 445 - -
Cmu06g1831 662 FunFam Acetolactate synthase 85 268 - -
Cmu06g1831 662 NCBIfam biosynthetic-type acetolactate synthase large subunit 91 654 IPR012846 GO:0000287(InterPro)|GO:0003984(InterPro)|GO:0009082(InterPro)|GO:0030976(InterPro)|GO:0050660(InterPro)
Cmu06g1831 662 FunFam Acetolactate synthase 275 445 - -
Cmu06g1831 662 Gene3D - 446 632 - -
Cmu06g1831 662 CDD TPP_AHAS 454 646 IPR039368 GO:0030976(InterPro)
Cmu06g1831 662 SUPERFAMILY DHS-like NAD/FAD-binding domain 280 445 IPR029035 -
Cmu06g1831 662 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 91 202 IPR012001 GO:0030976(InterPro)
Cmu06g1831 662 CDD TPP_PYR_POX_like 94 249 - -
Cmu06g1831 662 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 88 650 IPR045229 GO:0003984(PANTHER)|GO:0005948(PANTHER)|GO:0009097(PANTHER)|GO:0009099(PANTHER)|GO:0050660(PANTHER)
Cmu06g1831 662 Pfam Thiamine pyrophosphate enzyme, central domain 282 413 IPR012000 GO:0000287(InterPro)|GO:0030976(InterPro)
Cmu06g1831 662 Gene3D - 79 273 - -
Cmu06g1831 662 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 454 654 IPR029061 -
Cmu06g1831 662 ProSitePatterns Thiamine pyrophosphate enzymes signature. 513 532 IPR000399 GO:0000287(InterPro)|GO:0030976(InterPro)
Cmu06g1831 662 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 476 631 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Cmu06g1831 662 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 87 268 IPR029061 -
Cmu06g1831 662 FunFam Acetolactate synthase, mitochondrial 444 659 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1831 K01652 - - csv:101213339 1202.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36