Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1882 ATGCAAAAAGTCCAAAAACCCTTGGAAGCCCAAAACGATAGGCGTGATCGACCTGACCCAAAAGAAACGAGCGCCCCGATTCCTTCGTCTAACCCCACGATCATGGCTTCAACATCTTCAATCGCTTCCTCCATCAACAGACCATTTCCTCTACATTCTTCACATCTTCCGATTTCTTCTATTTTCTTTCGATTTCATCAACCCGATCTCTTTTCCATTCTTCACCATATTTGCTTCGCCATTCTTGCTTTCCAAAAAATCAAGCACTATTACCCTCTATCAGTTGCTATTAGTTGCTGGTTTAGTGAAGAACCAATCAAAACTCCGTGCAAGGTGCAAAGGGTGGTGAAAATTAAAAAAGTGGATTCGAAGCGAGGGAAGAGGCCCCTTTGTTCCGATGAGTCGGAGGAAGAAAATCCGTTGCCGATCTACTCAGCTAGATCTGAACATGACATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGAGCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATCCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAACTAA 882 46.49 MQKVQKPLEAQNDRRDRPDPKETSAPIPSSNPTIMASTSSIASSINRPFPLHSSHLPISSIFFRFHQPDLFSILHHICFAILAFQKIKHYYPLSVAISCWFSEEPIKTPCKVQRVVKIKKVDSKRGKRPLCSDESEEENPLPIYSARSEHDMSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRADHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTFMLNLHSSTSHPSHHQDHKN 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29536951 29538760 + CmPI595203_06g018820.1 Cmu06g1882 419542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1882 293 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 SMART rav1_2 201 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 MobiDBLite consensus disorder prediction 178 197 - -
Cmu06g1882 293 CDD AP2 201 259 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 PRINTS Ethylene responsive element binding protein signature 224 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 Gene3D AP2/ERF domain 200 260 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 MobiDBLite consensus disorder prediction 1 34 - -
Cmu06g1882 293 MobiDBLite consensus disorder prediction 8 22 - -
Cmu06g1882 293 FunFam Ethylene-responsive transcription factor 2 200 259 - -
Cmu06g1882 293 PANTHER DNA-BINDING DOMAIN 167 276 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cmu06g1882 293 Pfam AP2 domain 201 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1882 293 SUPERFAMILY DNA-binding domain 201 259 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0626 Cmu-Chr2:6090393 Cmu06g1882 Cmu-Chr6:29536951 1.10E-25 dispersed
Cmu05g1107 Cmu-Chr5:10487357 Cmu06g1882 Cmu-Chr6:29536951 1.60E-23 dispersed
Cmu06g1882 Cmu-Chr6:29536951 Cmu08g0657 Cmu-Chr8:18790444 7.20E-27 dispersed
Cmu06g1882 Cmu-Chr6:29536951 Cmu06g0162 Cmu-Chr6:1669394 4.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6463 PF00847 AP2 7.80E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1882 - - - 0.0