Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1883 ATGAAAAGAATTGGAAAGGGACTAGCTGTTGAGGGTGCAGCAGCTCTCTTCCCACCCACCCCTTGCTCTTGTTTTCTTTCTCTCTGTGGCCTCTTGTCTCCTGAGTCCTGTGAGTTGAGATTTGCGACCCCAGAGGGTAGCAAGGGAAGGTCGGAAAAAGAGCGACAGGTTGAGTTGTTTGTAGTTGTGTACCCCTACGCATACACGCAAAACACTACCACTACCACTACCACTACACATCCAATTCGGGTAATGGATCCAGAAGCTCTCTCAGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGCGCACCCCTCCCAGCGCCACTGCCCCCCTACTCGCTGCGGCCCAGGGAGTTGGGATTGGGAGGCCTCGAGGACTTGTTTCAGGCTTACGGAATCAGGTACTACACCGCTGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTAGAGGATATGATGAACAGCCTCTCTCACATTTTTCGTTGGGACCTTCTGGTGGGTGAGAGGTACGGTATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGACCGATTCCTCCAGGCGCCGTCACCTCTTGTCCAATGACAACACAACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTGTCGGAAGAACCGGTGCAGCAGGAGAAGGAGGCGGTTGGAAGTGGAGGAGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATCAGGAAGAAGCAGCGGAGGAAAAACGGATCAAAAAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAGAACGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATAGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTTCACTTATATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCCCTGCACTGTCTAGACGAGGAAGCGTCGAACGCATTGAGGAGCGTTTTCAAAGAGAGGGGCGAAAATGTGGGAGCCTGGCGACAGGCATGTTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGTCAACTCTGCCATGCCGAGCGCAACGGTTCCACAGCCTCCACCTCAGCCGCCGCACCTCACTTGCCTTTTTAG 1410 53.69 MKRIGKGLAVEGAAALFPPTPCSCFLSLCGLLSPESCELRFATPEGSKGRSEKERQVELFVVVYPYAYTQNTTTTTTTTHPIRVMDPEALSATLFKWDPRGMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDETDSSRRRHLLSNDNTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGAWEAVAAAEIRKKQRRKNGSKKKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSAAAPHLPF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29544586 29547164 - CmPI595203_06g018830.1 Cmu06g1883 419543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1883 469 PANTHER PROTEIN LEAFY 85 463 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu06g1883 469 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 294 457 IPR035209 GO:0003677(InterPro)
Cmu06g1883 469 Gene3D Protein LEAFY 295 463 IPR038276 -
Cmu06g1883 469 MobiDBLite consensus disorder prediction 260 298 - -
Cmu06g1883 469 Pfam Floricaula / Leafy protein SAM domain 127 203 IPR035079 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6464 PF17538 C_LFY_FLO 3.00E-107 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1883 - - - 0.0