Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1886 ATGTTTGTTGGTGGAAGCCCTCAACGGCTGGAGACTTACAGCAGCGCTGGTGATGTTTTGGAGGATAATCCTGTGGGAAGGTTGAAGGTGTTTGTCTATGAGCTTCCTAGTAAATACAACAAGAAAATTCTCCAGAAAGACCCTAGATGCCTTAATCACATGTTTGCAGCTGAGATCTTTATGCATCGCTTTCTTTTAACTAGTCCTGTTCGAACCCTTAATCCTGAAGAAGCTGACTGGTTTTACACTCCAGTTTATACAACTTGTGACCTTACTCCAAATGGTCTCCCTTTGCCATTTAAATCCCCTCGAATGATGAGAAGTGCAATACAACTTATTTCTTCAAACTGGCCTTACTGGAACCGGACGGAAGGGGCTGATCACTTTTTTGTCGTACCCCATGATTTTGGAGCTTGCTTCCACTATCAAGAAGAGAAGGCAATTGAAAGAGGAATACTTCCTTTGCTACAACGTGCTACCTTGGTTCAGACTTTTGGGCAACGAAATCATGTTTGCTTGAAGGAGGGATCAATTACAATTCCTCCTTATGCTCCTCCTCAGAAAATGCACGCCCACCTCATTCCTGAAAAAACTCCTAGGTCCATCTTTGTTTACTTTCGTGGACTATTCTATGATGTTGGAAATGATCCAGAAGGTGGTTATTACGCAAGAGGTGCAAGAGCTGCAGTGTGGGAGAACTTCAAGGATAATCCTCTTTTTGATATATCAACGGAGCATCCAACTACATACTATGAGGACATGCAGCGAGCTGTGTTTTGTCTTTGCCCGCTTGGATGGGCTCCTTGGAGCCCTAGATTGGTTGAGGCTGTGATATTTGGTTGCATCCCTGTTATCATAGCGGATGACATTGTTCTGCCCTTCGCGGATGCAATTCCTTGGGAAGAAATTGGGGTGTTTTTAGATGAGAAAGATGTTGCTAACTTGGACACAATATTAACGTCCATCCCACTTGAAATGATATTGAGAAAGCAGAGGCTGTTAGCAAATCCTTCCATGAAACAAGCAATGTTATTTCCACAGCCTGCCCAACCAGGAGATGCTTTTCACCAAGTCCTGAATGGTCTTGCCCGTAAGTTGCCTCATGACAGGAGTGTCTACCTTAAGGCCGGTGAGAAGATTCTAAATTGGACCGCAGGTCCGGTGGGTGACCTGAAGCCCTGGTAA 1185 44.47 MFVGGSPQRLETYSSAGDVLEDNPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLTSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHAHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFLDEKDVANLDTILTSIPLEMILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVYLKAGEKILNWTAGPVGDLKPW 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29560911 29563896 + CmPI595203_06g018860.1 Cmu06g1886 419546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1886 394 Pfam Exostosin family 27 322 IPR040911 -
Cmu06g1886 394 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 20 364 IPR004263 GO:0006486(InterPro)|GO:0009834(PANTHER)|GO:0010417(PANTHER)|GO:0016757(InterPro)|GO:0047517(PANTHER)|GO:0080116(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1886 K20870 - - csv:101205418 796.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1886 Cmu-Chr6:29560911 Cmu07g1174 Cmu-Chr7:27029873 2.50E-216 dispersed
Cmu06g1886 Cmu-Chr6:29560911 Cmu11g0318 Cmu-Chr11:3749438 5.30E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g7 . . . Bda15g00701 Bpe12g00454 . . . . . . . . . . . . . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0270 Cone19ag0254 . . . . . . . . . . . Bma08g00284 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01689 . Chy02g02709 Cme02g02119
Vvi17g8 . Blo16g00315 Bda06g00703 . . Bpe13g00160 . Bma12g01101 . . . Cma11g00002 . Car11g00002 . . Cpe04g01642 . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0269 Cone19ag0253 . . . . . . . . Bpe07g00913 . . . . . Cmo11g00002 . . . . . . . . . . . . . . . . . . . . Lsi06g01689 Csa01g00004 Chy02g02709 Cme02g02119
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68