Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0122 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGCAAATGGTCTCGTCTTCTTCAAGGCTCCAGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCGTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGCTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAATGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3561 42.04 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLANGLVFFKAPGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFVPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRMCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1073170 1087508 + CmPI595203_07g001220.1 Cmu07g0122 419673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0122 1186 FunFam Magnesium transporter MRS2-1 813 897 - -
Cmu07g0122 1186 Gene3D - 808 897 - -
Cmu07g0122 1186 FunFam Auxin-responsive protein 96 208 - -
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 603 638 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 657 681 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 481 507 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Coils Coil 989 1016 - -
Cmu07g0122 1186 Gene3D Magnesium transport protein CorA, transmembrane region 901 1116 - -
Cmu07g0122 1186 Pfam Magnesium transporter MRS2-like 838 1113 - -
Cmu07g0122 1186 CDD Mrs2_Mfm1p-like 826 1183 IPR039204 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 261 280 - -
Cmu07g0122 1186 Gene3D - 96 210 - -
Cmu07g0122 1186 SUPERFAMILY WD40 repeat-like 479 770 IPR036322 GO:0005515(InterPro)
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 401 426 - -
Cmu07g0122 1186 Coils Coil 261 289 - -
Cmu07g0122 1186 Gene3D - 458 772 IPR015943 GO:0005515(InterPro)
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 1 25 - -
Cmu07g0122 1186 FunFam U3 small nucleolar RNA-associated protein 18 homolog 459 773 - -
Cmu07g0122 1186 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 641 - -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 241 280 - -
Cmu07g0122 1186 Pfam AUX/IAA family 5 205 IPR033389 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 241 260 - -
Cmu07g0122 1186 SUPERFAMILY CAD & PB1 domains 103 197 - -
Cmu07g0122 1186 PANTHER WD-REPEAT PROTEIN-RELATED 263 770 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cmu07g0122 1186 SMART WD40_4 641 681 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SMART WD40_4 468 508 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SMART WD40_4 600 638 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1122 1173 IPR045863 -
Cmu07g0122 1186 ProSiteProfiles PB1 domain profile. 101 198 IPR053793 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 914 937 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1719 Cmu-Chr5:27339271 Cmu07g0122 Cmu-Chr7:1073170 3.80E-22 dispersed
Cmu07g0122 Cmu-Chr7:1073170 Cmu09g0718 Cmu-Chr9:6772460 3.30E-54 dispersed
Cmu02g0026 Cmu-Chr2:303931 Cmu07g0122 Cmu-Chr7:1073170 5.20E-73 transposed
Cmu02g0734 Cmu-Chr2:7715367 Cmu07g0122 Cmu-Chr7:1073170 7.70E-74 transposed
Cmu02g1228 Cmu-Chr2:25128846 Cmu07g0122 Cmu-Chr7:1073170 5.30E-276 transposed
Cmu05g1054 Cmu-Chr5:9822365 Cmu07g0122 Cmu-Chr7:1073170 2.50E-81 transposed
Cmu06g0647 Cmu-Chr6:7360798 Cmu07g0122 Cmu-Chr7:1073170 4.90E-148 transposed
Cmu08g0986 Cmu-Chr8:22116828 Cmu07g0122 Cmu-Chr7:1073170 1.20E-66 transposed
Cmu10g2053 Cmu-Chr10:26325819 Cmu07g0122 Cmu-Chr7:1073170 3.00E-85 transposed
Cmu02g1655 Cmu-Chr2:30403780 Cmu07g0122 Cmu-Chr7:1073170 7.90E-34 wgd
Cmu05g0504 Cmu-Chr5:4246628 Cmu07g0122 Cmu-Chr7:1073170 1.20E-48 wgd
Cmu06g0643 Cmu-Chr6:7291776 Cmu07g0122 Cmu-Chr7:1073170 1.70E-37 wgd
Cmu07g0122 Cmu-Chr7:1073170 Cmu09g0717 Cmu-Chr9:6739337 6.70E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6467 PF02309 AUX_IAA 2.20E-66 CL0072 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0122 K14553 - csv:101208908 929.472