Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0122 ATGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTTGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCATATAGGAAGAAGAGGTTGGGGGCTGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTGTGGGATGAAAGACTTCATGAATGAAACCAAACTAATAGATCTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGCAAATGGTCTCGTCTTCTTCAAGGCTCCAGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTGCTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACGTAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATCTGGGAAGGATGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTAATGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATGACAATGATCGATCATCAGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTGCCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGTAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCGTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTTGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTACATCCTGCTAGTGTCAACCAAAACCAAGGAGCTCATTGGAACACTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCCGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAATGTGCATACACAAGGGTGTCGAGGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATCATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTAATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACAACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCAGCCCTGAAAGTGGTTCCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3561 42.04 MSFEETELRLGLPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGAVQKGSKEEEISDEEKKVVKVRFVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNCGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLANGLVFFKAPGADWKMSLISQNVAVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKERKKEDEQQKEIKKLENFLFGSLYSPVESGKDEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDNDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFVPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRMCIHKGVEEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGSPESGSGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1073170 1087508 + CmPI595203_07g001220.1 Cmu07g0122 419673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0122 1186 FunFam Magnesium transporter MRS2-1 813 897 - -
Cmu07g0122 1186 Gene3D - 808 897 - -
Cmu07g0122 1186 FunFam Auxin-responsive protein 96 208 - -
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 603 638 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 657 681 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Pfam WD domain, G-beta repeat 481 507 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 Coils Coil 989 1016 - -
Cmu07g0122 1186 Gene3D Magnesium transport protein CorA, transmembrane region 901 1116 - -
Cmu07g0122 1186 Pfam Magnesium transporter MRS2-like 838 1113 - -
Cmu07g0122 1186 CDD Mrs2_Mfm1p-like 826 1183 IPR039204 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 261 280 - -
Cmu07g0122 1186 Gene3D - 96 210 - -
Cmu07g0122 1186 SUPERFAMILY WD40 repeat-like 479 770 IPR036322 GO:0005515(InterPro)
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 401 426 - -
Cmu07g0122 1186 Coils Coil 261 289 - -
Cmu07g0122 1186 Gene3D - 458 772 IPR015943 GO:0005515(InterPro)
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 1 25 - -
Cmu07g0122 1186 FunFam U3 small nucleolar RNA-associated protein 18 homolog 459 773 - -
Cmu07g0122 1186 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 641 - -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 241 280 - -
Cmu07g0122 1186 Pfam AUX/IAA family 5 205 IPR033389 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 241 260 - -
Cmu07g0122 1186 SUPERFAMILY CAD & PB1 domains 103 197 - -
Cmu07g0122 1186 PANTHER WD-REPEAT PROTEIN-RELATED 263 770 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cmu07g0122 1186 SMART WD40_4 641 681 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SMART WD40_4 468 508 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SMART WD40_4 600 638 IPR001680 GO:0005515(InterPro)
Cmu07g0122 1186 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1122 1173 IPR045863 -
Cmu07g0122 1186 ProSiteProfiles PB1 domain profile. 101 198 IPR053793 -
Cmu07g0122 1186 MobiDBLite consensus disorder prediction 914 937 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0122 K14553 - - csv:101208908 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1719 Cmu-Chr5:27339271 Cmu07g0122 Cmu-Chr7:1073170 3.80E-22 dispersed
Cmu07g0122 Cmu-Chr7:1073170 Cmu09g0718 Cmu-Chr9:6772460 3.30E-54 dispersed
Cmu02g0026 Cmu-Chr2:303931 Cmu07g0122 Cmu-Chr7:1073170 5.20E-73 transposed
Cmu02g0734 Cmu-Chr2:7715367 Cmu07g0122 Cmu-Chr7:1073170 7.70E-74 transposed
Cmu02g1228 Cmu-Chr2:25128846 Cmu07g0122 Cmu-Chr7:1073170 5.30E-276 transposed
Cmu05g1054 Cmu-Chr5:9822365 Cmu07g0122 Cmu-Chr7:1073170 2.50E-81 transposed
Cmu06g0647 Cmu-Chr6:7360798 Cmu07g0122 Cmu-Chr7:1073170 4.90E-148 transposed
Cmu08g0986 Cmu-Chr8:22116828 Cmu07g0122 Cmu-Chr7:1073170 1.20E-66 transposed
Cmu10g2053 Cmu-Chr10:26325819 Cmu07g0122 Cmu-Chr7:1073170 3.00E-85 transposed
Cmu02g1655 Cmu-Chr2:30403780 Cmu07g0122 Cmu-Chr7:1073170 7.90E-34 wgd
Cmu05g0504 Cmu-Chr5:4246628 Cmu07g0122 Cmu-Chr7:1073170 1.20E-48 wgd
Cmu06g0643 Cmu-Chr6:7291776 Cmu07g0122 Cmu-Chr7:1073170 1.70E-37 wgd
Cmu07g0122 Cmu-Chr7:1073170 Cmu09g0717 Cmu-Chr9:6739337 6.70E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G16010 52.1 2.8e-107 386.0
Cmu06g0647 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cmu07g0122 . 788 1159 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Cmu02g0734 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cmu05g1054 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.3e-136 481.1
Cmu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Cmu08g0986 . 6 380 MRS2 Gene Family AT2G03620 68.1 5.5e-137 484.6
Cmu10g2053 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cmu06g0647 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cmu07g0122 . 788 1121 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Cmu10g2053 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.8e-78 288.1
Cmu06g0647 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cmu07g0122 . 823 1081 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.4e-201 696.8
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G80900 54.0 5.3e-106 381.7
Cmu01g1362 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.6e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002983 1 10 1 1 1 1 2 2 2 1 2 2 2 1 0 2 2 2 2 2 1 1 0 2 0 2 1 1 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6467 PF02309 AUX_IAA 2.20E-66 CL0072 Cmu TR