Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g0123 | ATGAACAAATGTTCGACAAGACATGCAGAGTTGAGGTACGTAGTTGAAGTTTTTGATTCTTTTTGGGGTATGGCGAATCGGGTTGTTAAAGTGAAGAGGGAAGCCATTGCAGCATGCATAACTTGCCCACTTTGTAATAAGCTCTTGAAAGAAGCAACCACCATTTCTGAATGTCTTCATACTTTTTGCAGAAAGTGCATATCCGATAAGATTTCTGATGAGGAACTAGAAAACTGTCCAGTATGTAATATTGACCTCGGGTGTGTCCCACTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAATTCAAGACGCCGGAAGTTGTTCCTGTTATTCTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCAAGAGTGTCAAGTCATGCTACCGCAACTGGAAGAAGAACAGCAGCTGCTGCTGCAAGAATTGGTTCTATTTTACGAACACCAAGAGTCTCTTCTGAGAAGCGAGTGAAGAAAGAGGATGATTCCATGGACGACGGTTCAGAGAGCTCAAGTTCTCTTGAGACATCAGACAAATTCAATCAGAATAAAAGGCCGGATTCCAGTCCTACCAAGTCGACCATACCTTTGCGCAATAAAGAAGCCGAAAATGGTATTAACTCAATGGAAGGGAACTTGGATATCTGGAAACCTCTAAATTTCTTAGTTGAGGTTGCAAATAGGAGTAAATGTTCCAAATCTAATTCGCAAGGATTTGAAACTAAAGTCGAGCCTGGAGAAGTCGATGGAAGTGAAGCTCAGGCCAGCAAATCTAGAAATAGGGAAGGCAAACGCAAGCAAAAACGTGAGAATGGAAAAACTAGAGCAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCTTTTTATGGGGACTCCAGCCTTACACCTCAGGTTGTGTTGGATGCCTCTAGTGCTCGGCATGAAAGAAAAGCTGGTCCGATTTGGCTCTCACTCATAGCCTCTGATCAGGAAGGAGATGTATCGTTGCCACAAATTCCCGCTAAGTATTTGAGAATAAAGGATAGAAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCCCAAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTAGTTCCCACTCTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATCCCGGCATCGATCGGCTCATCGGCGGAGGATTTCATTATGGTTCTCTACTATGCTAGAAAGATCACAGTTTCTTGA | 1362 | 42.8 | MNKCSTRHAELRYVVEVFDSFWGMANRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEELENCPVCNIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKFKTPEVVPVILPPVRRKERSLSSLVVNSPRVSSHATATGRRTAAAAARIGSILRTPRVSSEKRVKKEDDSMDDGSESSSSLETSDKFNQNKRPDSSPTKSTIPLRNKEAENGINSMEGNLDIWKPLNFLVEVANRSKCSKSNSQGFETKVEPGEVDGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGDSSLTPQVVLDASSARHERKAGPIWLSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIMVLYYARKITVS | 453 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1092163 | 1096173 | + | CmPI595203_07g001230.1 | Cmu07g0123 | 419674 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g0123 | 453 | MobiDBLite | consensus disorder prediction | 190 | 220 | - | - | |
| Cmu07g0123 | 453 | SUPERFAMILY | RING/U-box | 38 | 107 | - | - | |
| Cmu07g0123 | 453 | Gene3D | - | 327 | 432 | - | - | |
| Cmu07g0123 | 453 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 83 | IPR001841 | - | |
| Cmu07g0123 | 453 | CDD | RING-HC_PCGF | 40 | 83 | - | - | |
| Cmu07g0123 | 453 | MobiDBLite | consensus disorder prediction | 251 | 318 | - | - | |
| Cmu07g0123 | 453 | Pfam | Zinc finger, C3HC4 type (RING finger) | 42 | 82 | - | - | |
| Cmu07g0123 | 453 | MobiDBLite | consensus disorder prediction | 275 | 309 | - | - | |
| Cmu07g0123 | 453 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 133 | IPR013083 | - | |
| Cmu07g0123 | 453 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 27 | 449 | IPR044807 | GO:0004842(InterPro) | |
| Cmu07g0123 | 453 | MobiDBLite | consensus disorder prediction | 172 | 187 | - | - | |
| Cmu07g0123 | 453 | ProSitePatterns | Zinc finger RING-type signature. | 58 | 67 | IPR017907 | - | |
| Cmu07g0123 | 453 | SMART | ring_2 | 42 | 82 | IPR001841 | - | |
| Cmu07g0123 | 453 | MobiDBLite | consensus disorder prediction | 170 | 220 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g1664 | Cmu-Chr2:30483243 | Cmu07g0123 | Cmu-Chr7:1092163 | 6.10E-94 | wgd | |
| Cmu05g0503 | Cmu-Chr5:4237663 | Cmu07g0123 | Cmu-Chr7:1092163 | 1.00E-60 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g0123 | K16277 | - | csv:101220692 | 763.066 |