Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0127 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTAGTTCAACCTCCTCAAGACCAACTTCATTTCAGGAATCTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTTATTTCTCTCTTAAATTCTGGTTTTGGTCATGCCAGAGTTAGAAAATTCAACAAGATTCCTCTCCCTTTGCCTCAAAAATCCCTCTTAGATTCCCCAAATTACACTCCACATCCTCCAAACAAAAATCTTTACCCTTTTCACTCTGGTTTGAATGGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTACAATTGAGTCCAAATGACAAGAATTCCCTCCAAATTCCCAAAAAATCTCCATCTTTAAACTTCAGCTTCCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGAGGATTTTGGCTCATCAGAAACAAATGAAACAGCAAGCAGAAATGATGTTTCTAAGGAATAACAGTGGGATGAACCTGAATTTTGACACATCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCGCCGACGGAAGCTCGTTCCATTTGATCGGACCGTCGTCAACGACAACGACGTCGGCCGATAACAAGAGGAAGTTTTCTGCAAGAGGAGATGAAGGAAGCTTGAAATGTGGAAGTTCTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTACCTGCCATAAGTAACAAACTTGCAGATATCCCTTCTGATGATTATTCATGGAGAAAGTATGGGCAGAAGCCAATTAAGGGCTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCGGCGAGAAAGCATGTTGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTATGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 1026 41.91 MEEVEEANKSAIESCHGVLNLLVQPPQDQLHFRNLMVETKEAVFKFKKVISLLNSGFGHARVRKFNKIPLPLPQKSLLDSPNYTPHPPNKNLYPFHSGLNGKVSIFLGNPDLQLSPNDKNSLQIPKKSPSLNFSFPQQQQQQQQQQQQQQQRILAHQKQMKQQAEMMFLRNNSGMNLNFDTSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTTTTSADNKRKFSARGDEGSLKCGSSGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1121964 1123677 + CmPI595203_07g001270.1 Cmu07g0127 419678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0127 341 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0127 341 FunFam WRKY transcription factor 65 257 334 - -
Cmu07g0127 341 MobiDBLite consensus disorder prediction 212 226 - -
Cmu07g0127 341 MobiDBLite consensus disorder prediction 116 158 - -
Cmu07g0127 341 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 337 IPR044810 GO:0003700(InterPro)
Cmu07g0127 341 Pfam Plant zinc cluster domain 233 271 IPR018872 -
Cmu07g0127 341 Gene3D WRKY domain 257 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0127 341 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0127 341 MobiDBLite consensus disorder prediction 212 234 - -
Cmu07g0127 341 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0127 341 Pfam WRKY DNA -binding domain 275 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1439 Cmu-Chr6:25661251 Cmu07g0127 Cmu-Chr7:1121964 3.50E-39 dispersed
Cmu07g0127 Cmu-Chr7:1121964 Cmu07g0308 Cmu-Chr7:3032564 5.60E-23 dispersed
Cmu07g0127 Cmu-Chr7:1121964 Cmu09g0726 Cmu-Chr9:6856596 3.30E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6468 PF03106 WRKY 1.20E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0127 - - - 0.0