Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g0147 | ATGGCTTCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCGGTGGCAGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCGCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA | 708 | 40.82 | MASSSSSSSANTSVSGSGGGGGSGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1393721 | 1395123 | + | CmPI595203_07g001470.1 | Cmu07g0147 | 419698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g0147 | 235 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 22 | 198 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cmu07g0147 | 235 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
Cmu07g0147 | 235 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmu07g0147 | 235 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 124 | IPR004883 | - | |
Cmu07g0147 | 235 | ProSiteProfiles | LOB domain profile. | 25 | 127 | IPR004883 | - | |
Cmu07g0147 | 235 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g0241 | Cmu-Chr5:2045489 | Cmu07g0147 | Cmu-Chr7:1393721 | 1.70E-39 | dispersed | |
Cmu06g0034 | Cmu-Chr6:357722 | Cmu07g0147 | Cmu-Chr7:1393721 | 7.60E-43 | dispersed | |
Cmu07g0147 | Cmu-Chr7:1393721 | Cmu09g0771 | Cmu-Chr9:7339267 | 1.50E-38 | dispersed | |
Cmu07g0147 | Cmu-Chr7:1393721 | Cmu07g0148 | Cmu-Chr7:1399554 | 2.70E-40 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6472 | PF03195 | LOB | 2.70E-36 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g0147 | K13944 | - | csv:101214521 | 367.851 |