Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0178 ATGCATGCCACGTGGCAAAAGTTATGGGTATTGCTGTTTCTGGATTTTGCCTTCCCTCGCTCTTCTTTTACTTTTGGGAAATTAAAAGATTTTTGGCTGCAGTCAAACAATATGAAGAGTGACGTTAAGATTAAAAGGGGGAGGAGCGCTGGAAAAAGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTGGGGATGATATGATTCCTGCAGCGGAATCGCCTTCTGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGGGAGATCGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCGCTTCGTGAGAGTGGTTGCTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGACCGTCCACAGAGACAATCACAGAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGCTACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGCAGGAACCACTGCTCGAATCCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGATTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTGTGTTACTATGGAGCGGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAAGTGTTGGGTAATCATGAGGATCCTAAATCGATTCCTGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCCGAGAAGTCCACCAGACAATCTGAGGCAATTGAGGCCTTGGAAGCCGCACGGAAGACAACTAGAACAGCTGACCCTAATGTCCTCTATCATTTGAGTCTTGAATATGCTGACGAGAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGAATTCTCTCTGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTAGATCAGACAGGGAAATGGGAGCAAGCCGAGTTGCTTCAAACGAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAATTTCAGTTTGGGAGATAAGAAGCTACATAAGAGCAGCAGAAATCATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTGTAGTCTACATAAGGCTCTCACAATGGCACGATGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATCTCTTCTCATTCGGCACCTAGATGCCACATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTTCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTCTCATCTGCGGTGGTTATCAGACATCTTGGCCACCAATCGCATCCTGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGATCAAACGAACCATGCTGCGTGGTACAATCTTGGGCTATTCTACAAGTCTGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2316 42.92 MHATWQKLWVLLFLDFAFPRSSFTFGKLKDFWLQSNNMKSDVKIKRGRSAGKRENIRKIMKCLCSGEKTAGDDMIPAAESPSAFENSGSGRSSRTGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRPQRQSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRDLAGQIEELPPGILHRQERYHALALCYYGAGENLTALNLLRKVLGNHEDPKSIPALLMASKICGENCDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSVYSKSATADSEKSTRQSEAIEALEAARKTTRTADPNVLYHLSLEYADERKLDSALYYAKKCLKLEGGSNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLQTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKNFSLGDKKLHKSSRNHARRLQLEVWHDLAVVYIRLSQWHDAEACLSKSKAISSHSAPRCHITGMLYEAKGLYKEALKAFMASLDIDPVHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1748365 1753049 + CmPI595203_07g001780.1 Cmu07g0178 419729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0178 771 Pfam Tetratricopeptide repeat 509 574 - -
Cmu07g0178 771 SUPERFAMILY TPR-like 479 699 IPR011990 GO:0005515(InterPro)
Cmu07g0178 771 PANTHER PROTEIN NPG1 51 771 IPR043376 -
Cmu07g0178 771 Gene3D Tetratricopeptide repeat domain 567 765 IPR011990 GO:0005515(InterPro)
Cmu07g0178 771 Gene3D Tetratricopeptide repeat domain 371 566 IPR011990 GO:0005515(InterPro)
Cmu07g0178 771 MobiDBLite consensus disorder prediction 79 102 - -
Cmu07g0178 771 Pfam Tetratricopeptide repeat 666 691 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 ProSiteProfiles TPR repeat profile. 659 692 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 375 408 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 568 601 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 190 223 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 532 565 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 659 692 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 497 530 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 729 765 IPR019734 GO:0005515(InterPro)
Cmu07g0178 771 SMART tpr_5 625 658 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1591 Cmu-Chr8:27598842 Cmu07g0178 Cmu-Chr7:1748365 8.70E-159 transposed
Cmu11g1660 Cmu-Chr11:28846350 Cmu07g0178 Cmu-Chr7:1748365 2.30E-170 transposed
Cmu05g0440 Cmu-Chr5:3677530 Cmu07g0178 Cmu-Chr7:1748365 2.10E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0178 K21843 - csv:101223229 1340.1