Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0202 ATGGCAGAAATGGCCTGCTCCGCTGCTGACCTTCACCACCTCCTCGGCGGCTCAGCCAACGCCACTGCCGTCGCGGAGTACATTTGCAGCCGATTCGATTCCATGTCGACGAAATTTGTCGACACAAGCTATGCGGTTGACAACACATACCTTCTGTTTTCAGCTTACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGAGCCAAAAACACAATGAATATTATGTTAACTAATGTTCTCGATGCAGCTACTGGTGGAATATTTTATTATGTATTTGGGTTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTCATTGGACACCATTATTTTGGACTCTCACAGTTTCCTTCTTCTTCATTTGATTATGGGTTCTTCCTTTTTCAATGGGCTTTTGCAATCGCTGCTGCTGGGATTACAAGTGGATCCATTGCTGAAAGAACTCAGTTTGTTGCCTATTTGATCTATTCCTCTGTTTTGACTGGTTGGGTATATCCAATCGTTTCTCATTGGTTTTGGTCGTCCGATGGGTGGGGAAGTGCCGCTCGGTCCGATAACCTCCTATTTGGGTCCGGCGTGATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCCTCATAGAAGGCCCTCGAATCGGCCGATTCGATCACGCCGGCCGCTCCGTCGCCCTCCGTGGCCACAGCGGCACATTGGTTGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTTCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCCTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACTACCCTCGCCGGCTGCACAGCAGCACTAACCACACTCTTCGGCAAACGCCTCCTCGTCGGCCACTGGAATGTCACCGATGTTTGCAACGGTTTATTAGGCGGATTCGCCGCCATAACCTCCGGTTGCGCGGTGGTGGATCCATGGGCAGCAATTGTGTGCGGGTTTGTCTCAGCCTGGGTTTTGATCGGATTCAACAAACTAGCGGAGAAAATGAAGTACGACGATCCACTAGAGGCGGCGCAATTGCACGGTGGTTGTGGAGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAGGCTTATGTTAACGAGATTTATCCAGGGTTGCCGGAGAGGCCGTACGGGCTGTTGATGGGCGGCGGCGGGAGGTTGTTAGCGGCTCATTTAGTGCAAATTTTGTCGATTGTTGGTTGGGTTACTGTGACAATGGGGCTTGTTTTTTGGTTGTTGCATAAGTTTGAGTTGCTGAGGATTACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGCGGTTTGGCTTATGTGTATAATGATGAAGAGAAGCTTTAA 1446 51.8 MAEMACSAADLHHLLGGSANATAVAEYICSRFDSMSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGWVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFVSAWVLIGFNKLAEKMKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHLVQILSIVGWVTVTMGLVFWLLHKFELLRITPEEEMAGMDLTSHGGLAYVYNDEEKL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1930535 1932942 + CmPI595203_07g002020.1 Cmu07g0202 419753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0202 481 Gene3D Ammonium transporter AmtB like domains 25 481 IPR029020 -
Cmu07g0202 481 NCBIfam ammonium transporter 47 473 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu07g0202 481 SUPERFAMILY Ammonium transporter 44 454 - -
Cmu07g0202 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu07g0202 481 FunFam Ammonium transporter 28 481 - -
Cmu07g0202 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu07g0202 481 PANTHER AMMONIUM TRANSPORTER 26 476 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0202 Cmu-Chr7:1930535 Cmu11g1050 Cmu-Chr11:18627852 5.50E-210 dispersed
Cmu05g0408 Cmu-Chr5:3469217 Cmu07g0202 Cmu-Chr7:1930535 9.70E-200 wgd
Cmu06g0746 Cmu-Chr6:8791582 Cmu07g0202 Cmu-Chr7:1930535 3.10E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0202 K03320 - csv:101223077 908.672