Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g0223 | ATGGTGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCCATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTGTGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA | 1308 | 45.11 | MVVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2223283 | 2228736 | - | CmPI595203_07g002230.1 | Cmu07g0223 | 419774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 109 | 126 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 169 | 185 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 233 | 254 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 377 | 401 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 335 | 354 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 133 | 158 | IPR018082 | - | |
Cmu07g0223 | 435 | PRINTS | Pollen allergen Amb family signature | 406 | 429 | IPR018082 | - | |
Cmu07g0223 | 435 | Gene3D | - | 86 | 428 | IPR012334 | - | |
Cmu07g0223 | 435 | Pfam | Pectate lyase | 169 | 350 | IPR002022 | - | |
Cmu07g0223 | 435 | FunFam | Pectate lyase | 86 | 428 | - | - | |
Cmu07g0223 | 435 | SUPERFAMILY | Pectin lyase-like | 64 | 430 | IPR011050 | - | |
Cmu07g0223 | 435 | PANTHER | PECTATE LYASE 18-RELATED | 26 | 432 | IPR045032 | GO:0030570(InterPro) | |
Cmu07g0223 | 435 | SMART | amb_all | 161 | 358 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g0223 | Cmu-Chr7:2223283 | Cmu08g1687 | Cmu-Chr8:28428660 | 6.00E-171 | dispersed | |
Cmu09g1873 | Cmu-Chr9:34862403 | Cmu07g0223 | Cmu-Chr7:2223283 | 5.30E-169 | transposed | |
Cmu05g0385 | Cmu-Chr5:3284639 | Cmu07g0223 | Cmu-Chr7:2223283 | 1.50E-204 | wgd | |
Cmu06g0763 | Cmu-Chr6:9141077 | Cmu07g0223 | Cmu-Chr7:2223283 | 3.70E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g0223 | K01728 | - | csv:101207204 | 831.632 |