Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0223 ATGGTGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAACGCCATGGTTCGAAGCTCGCCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCCATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTGTGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 45.11 MVVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2223283 2228736 - CmPI595203_07g002230.1 Cmu07g0223 419774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cmu07g0223 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cmu07g0223 435 Gene3D - 86 428 IPR012334 -
Cmu07g0223 435 Pfam Pectate lyase 169 350 IPR002022 -
Cmu07g0223 435 FunFam Pectate lyase 86 428 - -
Cmu07g0223 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Cmu07g0223 435 PANTHER PECTATE LYASE 18-RELATED 26 432 IPR045032 GO:0030570(InterPro)
Cmu07g0223 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0223 Cmu-Chr7:2223283 Cmu08g1687 Cmu-Chr8:28428660 6.00E-171 dispersed
Cmu09g1873 Cmu-Chr9:34862403 Cmu07g0223 Cmu-Chr7:2223283 5.30E-169 transposed
Cmu05g0385 Cmu-Chr5:3284639 Cmu07g0223 Cmu-Chr7:2223283 1.50E-204 wgd
Cmu06g0763 Cmu-Chr6:9141077 Cmu07g0223 Cmu-Chr7:2223283 3.70E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0223 K01728 - csv:101207204 831.632