Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0262 ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAGAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAATCACTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGCGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTTGGTAATTTCGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA 846 44.68 MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2567190 2574165 + CmPI595203_07g002620.1 Cmu07g0262 419813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0262 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cmu07g0262 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Cmu07g0262 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0262 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cmu07g0262 281 SUPERFAMILY RING/U-box 199 278 - -
Cmu07g0262 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Cmu07g0262 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Cmu07g0262 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Cmu07g0262 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0262 281 SUPERFAMILY TPR-like 12 133 IPR011990 GO:0005515(InterPro)
Cmu07g0262 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0262 K09561 - - csv:101215457 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0262 Cmu-Chr7:2567190 Cmu05g0168 Cmu-Chr5:1461590 3.00E-06 transposed
Cmu07g0262 Cmu-Chr7:2567190 Cmu10g2558 Cmu-Chr10:32371144 3.00E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003324 3 4 1 6 2 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 45