Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g0263 | ATGGCCAAAACAGGCGTCTTTGATTCTGACCCTGCAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACGTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCGACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCCGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCAATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGGTAGTTAATATGACCCATACCGCCTAA | 1383 | 43.31 | MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA | 460 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2580561 | 2582432 | - | CmPI595203_07g002630.1 | Cmu07g0263 | 419814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g0263 | 460 | SMART | Ubox_2 | 76 | 139 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu07g0263 | 460 | Pfam | Armadillo/beta-catenin-like repeat | 291 | 327 | IPR000225 | GO:0005515(InterPro) | |
Cmu07g0263 | 460 | SMART | arm_5 | 288 | 328 | IPR000225 | GO:0005515(InterPro) | |
Cmu07g0263 | 460 | SMART | arm_5 | 246 | 287 | IPR000225 | GO:0005515(InterPro) | |
Cmu07g0263 | 460 | SMART | arm_5 | 368 | 409 | IPR000225 | GO:0005515(InterPro) | |
Cmu07g0263 | 460 | CDD | RING-Ubox_PUB | 74 | 126 | IPR045210 | - | |
Cmu07g0263 | 460 | Gene3D | - | 169 | 454 | IPR011989 | - | |
Cmu07g0263 | 460 | PANTHER | U BOX DOMAIN-CONTAINING | 40 | 452 | - | - | |
Cmu07g0263 | 460 | SUPERFAMILY | ARM repeat | 182 | 450 | IPR016024 | - | |
Cmu07g0263 | 460 | ProSiteProfiles | U-box domain profile. | 72 | 146 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu07g0263 | 460 | Pfam | U-box domain | 74 | 143 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu07g0263 | 460 | FunFam | RING-type E3 ubiquitin transferase | 72 | 146 | - | - | |
Cmu07g0263 | 460 | SUPERFAMILY | RING/U-box | 73 | 149 | - | - | |
Cmu07g0263 | 460 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 146 | IPR013083 | - | |
Cmu07g0263 | 460 | FunFam | RING-type E3 ubiquitin transferase | 159 | 456 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g0263 | Cmu-Chr7:2580561 | Cmu11g0608 | Cmu-Chr11:6653490 | 7.00E-37 | dispersed | |
Cmu07g0263 | Cmu-Chr7:2580561 | Cmu02g2020 | Cmu-Chr2:33917099 | 4.10E-37 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g0263 | K27971 | - | csv:101215688 | 813.527 |