Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0263 ATGGCCAAAACAGGCGTCTTTGATTCTGACCCTGCAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCGTCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACGTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCGACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCCGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCAATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGGTAGTTAATATGACCCATACCGCCTAA 1383 43.31 MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2580561 2582432 - CmPI595203_07g002630.1 Cmu07g0263 419814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0263 460 SMART Ubox_2 76 139 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0263 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515(InterPro)
Cmu07g0263 460 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Cmu07g0263 460 SMART arm_5 246 287 IPR000225 GO:0005515(InterPro)
Cmu07g0263 460 SMART arm_5 368 409 IPR000225 GO:0005515(InterPro)
Cmu07g0263 460 CDD RING-Ubox_PUB 74 126 IPR045210 -
Cmu07g0263 460 Gene3D - 169 454 IPR011989 -
Cmu07g0263 460 PANTHER U BOX DOMAIN-CONTAINING 40 452 - -
Cmu07g0263 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Cmu07g0263 460 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0263 460 Pfam U-box domain 74 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0263 460 FunFam RING-type E3 ubiquitin transferase 72 146 - -
Cmu07g0263 460 SUPERFAMILY RING/U-box 73 149 - -
Cmu07g0263 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Cmu07g0263 460 FunFam RING-type E3 ubiquitin transferase 159 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0263 Cmu-Chr7:2580561 Cmu11g0608 Cmu-Chr11:6653490 7.00E-37 dispersed
Cmu07g0263 Cmu-Chr7:2580561 Cmu02g2020 Cmu-Chr2:33917099 4.10E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0263 K27971 - csv:101215688 813.527