Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0270 ATGGCACCGCTCTTAAACGATCACTTCAGTTTTCAAACGCCAGAAAATGAGGCTGTTATTACTAAAAAAATTCCTCGCTCTGAACACACCAACAAGTATCCTACTTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTTCATGCCCCCAGAGAAGTTCCCTCTGACCCATTTCTTGATGTTGTCTCCTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTCTCATTGATTCCTCAACTGGAAATTCAATATCTTACAGAGAAATGTTTCGTATGGTCAAGTCTGTGGCTGCTGGCCTCCACAAGTTGGGTATATCACAAGGAGATGTAGTTTTGCTTGTGATACCAAATTCCATTTTCTATCCCATTATTCTTTTGGGGATCCTGTATTTGGGAGCAGTTATTACAACCATGTTTCCTCAAAGCAGTTCCGCAGAAATCAAGAAACGAACCAGTGATTGCAATGTGCGTTTCGCTTTTACAATGACTCAGAAAATTAAGAATGTCGAAGCACTGGGAATTCAGGCAATTGGGGTACCAGAAAATACGAATTTGGACTTGATGAGGCCTATGGGATTTTCTTCTTTTTATGAGCTTATTTCAGGTGGTTCTGATTTGAATAAAAGACCAGTGATTAGACAAGAAGATACGGCTGCTATATTGTTTTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTTTGTTAACACATAGAAATTTCCTATCTACGATCGAGCTTTTTGTCCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATATATATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTATTGTTGTAATGAGCAAATTTGATGTCAAAGAGGTGGTCAAGGCTATTGACAGATTTAAAGTCACACATTTTCCAGTTGTTCCACCAATAATGACAACTATGGCTAGGACTGCAGAGAAAATTGGGGTCCATAGATTTAGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAACAAGAAGACCATTGACGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACCCGCGGCTTCAATACCAAAAATATTAGAAATTATTTGTCAGTGGGACTTTTAGCTCCAAACACAGAAGCTAAAGTAGTTGATTGGGTTACCGGATCTTTCGTGCCTCCTGGTAAAACTGGCGAACTTTTGTTACGCGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATTGTCTACTTTGACCGAGAAGGATACTTATATGTTGTTGACCGTTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCTCCTACTGATTTAGAAGCTGTGGTGATCACACATCCAGAAGTTCTTGATACTGCAGTAACAGCGGCCAAAGATGAAGAATGTGGAGAGATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGCACACTCTCACAAAAAGATGTTATTGATTATGTTGCTCAACAGGTTGCACCATATAAAAAAATCAGAAAAGTGATTTTTACAGAATCAATACCAAAATCTGCTGCTGGCAAAGTACTTCGTAAGGAACTGGGGAAGTATATGCCTTCTAAACTATGA 1725 40.06 MAPLLNDHFSFQTPENEAVITKKIPRSEHTNKYPTWYSPDTGICRSVHAPREVPSDPFLDVVSFIFSFQHNGHSALIDSSTGNSISYREMFRMVKSVAAGLHKLGISQGDVVLLVIPNSIFYPIILLGILYLGAVITTMFPQSSSAEIKKRTSDCNVRFAFTMTQKIKNVEALGIQAIGVPENTNLDLMRPMGFSSFYELISGGSDLNKRPVIRQEDTAAILFSSGTTGVSKGVLLTHRNFLSTIELFVRFEASQYEYLPTENVYLAAIPMFHIYGLSIFVMGLMSLGSSIVVMSKFDVKEVVKAIDRFKVTHFPVVPPIMTTMARTAEKIGVHRFRSLKQVSCGAASLNKKTIDDFVQALPHVDFIQGYGMTESTAVGTRGFNTKNIRNYLSVGLLAPNTEAKVVDWVTGSFVPPGKTGELLLRGPGSMKGYLNNPEATMSTIDQENWLHTGDIVYFDREGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDTAVTAAKDEECGEIPVAFVVKKPGSTLSQKDVIDYVAQQVAPYKKIRKVIFTESIPKSAAGKVLRKELGKYMPSKL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2648584 2652429 - CmPI595203_07g002700.1 Cmu07g0270 419821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0270 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 566 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Cmu07g0270 574 SUPERFAMILY Acetyl-CoA synthetase-like 69 569 - -
Cmu07g0270 574 CDD 4CL 53 566 - -
Cmu07g0270 574 Pfam AMP-binding enzyme C-terminal domain 486 560 IPR025110 -
Cmu07g0270 574 ProSitePatterns Putative AMP-binding domain signature. 221 232 IPR020845 -
Cmu07g0270 574 Gene3D - 472 571 IPR045851 -
Cmu07g0270 574 FunFam 4-coumarate--CoA ligase 2 472 573 - -
Cmu07g0270 574 FunFam Long-chain-fatty-acid--CoA ligase FadD 49 471 - -
Cmu07g0270 574 Gene3D - 47 471 IPR042099 -
Cmu07g0270 574 Pfam AMP-binding enzyme 70 434 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2194 Cmu-Chr5:31396677 Cmu07g0270 Cmu-Chr7:2648584 4.60E-107 dispersed
Cmu07g0270 Cmu-Chr7:2648584 Cmu10g2729 Cmu-Chr10:33970409 4.70E-107 dispersed
Cmu07g0270 Cmu-Chr7:2648584 Cmu06g1391 Cmu-Chr6:25068067 7.30E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0270 K01904 - csv:101219578 1001.12