Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0272 ATGCCCTTTTCGGCGAAGCAACGCACCCACGCGCCACGTGACTCCCAGAATATTCCTTTACCCGGGTACGCCGGTGGAATAATCCACGCTGGCATCCACTGCTTCTTTCATATTCGTCGCCGTCCTTCGCTCCATTTGCTTCCCTTCTCCCCCGCCATTGATGATTCCTTGCACTGTCTATGTTTCGGATTGAAATCGAGTGTATTTTTAGGATCGAGGAATATAATCAATACGCAAAGCCTCGAGAAAATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA 1035 43.48 MPFSAKQRTHAPRDSQNIPLPGYAGGIIHAGIHCFFHIRRRPSLHLLPFSPAIDDSLHCLCFGLKSSVFLGSRNIINTQSLEKMERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2695056 2699250 + CmPI595203_07g002720.1 Cmu07g0272 419823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0272 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 80 323 IPR046955 GO:0003700(InterPro)
Cmu07g0272 344 FunFam Myb family transcription factor 100 158 - -
Cmu07g0272 344 Gene3D - 100 157 - -
Cmu07g0272 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 155 IPR006447 GO:0003677(InterPro)
Cmu07g0272 344 Pfam Myb-like DNA-binding domain 103 154 IPR001005 -
Cmu07g0272 344 Pfam MYB-CC type transfactor, LHEQLE motif 188 234 IPR025756 -
Cmu07g0272 344 SUPERFAMILY Homeodomain-like 101 158 IPR009057 -
Cmu07g0272 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 158 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0272 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0357 Cmu-Chr5:3032904 Cmu07g0272 Cmu-Chr7:2695056 2.70E-36 dispersed
Cmu07g0186 Cmu-Chr7:1804572 Cmu07g0272 Cmu-Chr7:2695056 2.00E-25 dispersed
Cmu07g0272 Cmu-Chr7:2695056 Cmu10g2094 Cmu-Chr10:26849092 5.60E-31 dispersed
Cmu07g0272 Cmu-Chr7:2695056 Cmu09g2179 Cmu-Chr9:37863001 7.90E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu09g1113 . 202 406 G2-like Transcription Factor Family AT5G16560 51.7 7.1e-41 165.2
Cmu05g2006 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.4e-40 161.0
Cmu08g1485 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cmu05g2357 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Cmu08g0469 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.1e-52 201.4
Cmu03g0752 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Cmu09g2179 . 1 390 G2-like Transcription Factor Family AT1G79430 53.5 4.6e-84 308.5
Cmu02g1871 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.3e-74 274.6
Cmu01g2050 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.1e-56 216.1
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Cmu04g0625 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6482 PF00249 Myb_DNA-binding 4.20E-07 CL0123 Cmu TF