Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0272 ATGCCCTTTTCGGCGAAGCAACGCACCCACGCGCCACGTGACTCCCAGAATATTCCTTTACCCGGGTACGCCGGTGGAATAATCCACGCTGGCATCCACTGCTTCTTTCATATTCGTCGCCGTCCTTCGCTCCATTTGCTTCCCTTCTCCCCCGCCATTGATGATTCCTTGCACTGTCTATGTTTCGGATTGAAATCGAGTGTATTTTTAGGATCGAGGAATATAATCAATACGCAAAGCCTCGAGAAAATGGAGCGAAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTAATGAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA 1035 43.48 MPFSAKQRTHAPRDSQNIPLPGYAGGIIHAGIHCFFHIRRRPSLHLLPFSPAIDDSLHCLCFGLKSSVFLGSRNIINTQSLEKMERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLMNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKVEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2695056 2699250 + CmPI595203_07g002720.1 Cmu07g0272 419823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0272 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 80 323 IPR046955 GO:0003700(InterPro)
Cmu07g0272 344 FunFam Myb family transcription factor 100 158 - -
Cmu07g0272 344 Gene3D - 100 157 - -
Cmu07g0272 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 155 IPR006447 GO:0003677(InterPro)
Cmu07g0272 344 Pfam Myb-like DNA-binding domain 103 154 IPR001005 -
Cmu07g0272 344 Pfam MYB-CC type transfactor, LHEQLE motif 188 234 IPR025756 -
Cmu07g0272 344 SUPERFAMILY Homeodomain-like 101 158 IPR009057 -
Cmu07g0272 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 158 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0357 Cmu-Chr5:3032904 Cmu07g0272 Cmu-Chr7:2695056 2.70E-36 dispersed
Cmu07g0186 Cmu-Chr7:1804572 Cmu07g0272 Cmu-Chr7:2695056 2.00E-25 dispersed
Cmu07g0272 Cmu-Chr7:2695056 Cmu10g2094 Cmu-Chr10:26849092 5.60E-31 dispersed
Cmu07g0272 Cmu-Chr7:2695056 Cmu09g2179 Cmu-Chr9:37863001 7.90E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6482 PF00249 Myb_DNA-binding 4.20E-07 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0272 - - - 0.0