Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0281 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCCCCAGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCAACTGAAGTATTGCCCGATGGTATGTACCAAATATATCTGCACGAAATCATAAACGAATTACATGAAGAATTCCCGGATTCCTCCTTTCTTGCATTTAATTTTCGTGAAGGGGAGAATAGGAGCCAATTTTCAGAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATACGAAGGTTGCCCTCTTCTTCCATTGTCGTTGATACAGCATTTCCTCCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAAATGCAAAGTGGTGAGCGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGTTGCAGACCGGTCATTCGCATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTCTCCACGCAGATGCTTTTCTCTATGCCTAAGAAGAACAAGCCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTTAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCCGAGGTTTTGTTTGGGGAGATGGAAAGCATCTCCCCTCCAAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCATTTTCCAAGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAGCAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTCTTTGATATGATTACAAAGCCTTTTGTTGATTCAACTAATATCAACTTTACAAATCCGGCCATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTCTACCCTCTTCATCACCTCCACTAACTTCTTTTGGCTCCCCAGCCCTTCCTACAAGTTCTTCAATGTCATCGCCACTGTTGCCTCCATCTAATCTACCATCTGCCAATGCTAGTGGGGAACTTGTCTCAAATAGAATGGCACCCACTGTTAAAGCGATTCCTCCACCACCGCCGCCACCACCTTTTTCTCTATCACATAATAAACCTCATGTAGAAACTTCCTTTGGTTCAGATTTGACCACTGTGACAATGCATGGGAGACCCCCTCCACCCCCTCCACCTCCACCTCAATATCCTACTAGTAACAATTCTATTACAGCCTCTACTCATTCACTTTCTCATGTTCCTAAATCGTCTGATACTCCTCCACCCCCACCTCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCCCCGCCTCCGCCCCTGGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCCGTAGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCACCTATAGTTCCAAAATCTTTTGGTGCTCCTCCACCTCCGCCTCCACCTCCACCTATAGTTCCAAAATCTTCTATTGCTCCTCCACCTCCGCCTCCACCTCCAGTTTCAAAATCTTCTAATGCTCCTCCACCTCCTCCTCCTCCACCTCCATTTCTAAAGTCATCTAATGCTCTTCCATCTCCGCCTCTGCCTCCGCCTCCACCTCCGCTTCTAAAATCATCCAGTGCTCCTCCACCTCCACCTCCGCCTCCACCTTCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCACCTTCAATTCCAAAGCTTTCTGGTGCTTCACCTCCACCTCCTCTTCCACAATCAAATCGTGGTGCACCAGCTCCACCTCCTCCACCACCAAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAAGTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCTCATCCTCCGACGAGCCATGGTGCTACACCAATGCCACCCCCTCCCCCCGGGTCAAGAGGATCAAATGTACCACCACCTCCTCCTCCTTCTGGACGAGGCAAAGCTTCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACAGGAGTTGTAAATGCTCCAAAAAAAACCACTTTAAAACCATTACACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGACGTGGTTCCAGCATCAACAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGGATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAACACAATAAATGATGCTACAAGAGAGGTCAAAGAATCCGCAAAATTGCGTCAGATAATGCAAACGATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCAGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTCGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACCGCTTCAGAAAATGATGGTGCCATCTCTGCTGGTTTCCAGAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCTTTATATTCTGAAGTGGGGAGAAATGCTGATTCACTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTTACTCAAATTTTAATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGATAAGAGAAAAACAGAGAAGGAAGCCATGAAAGAACGAAGTTCGGTTAAAGCAAAGTTTGAATGTGAATATCAGATTTGTGATTCATGGACTTCCATCAAGCTGAACATGAGGCAATTTTGTTCCCAGAGGTTCGAGTGTTCTGTTGATCTCAACTTGACATTGTCATTATGGTAA 4026 44.34 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMQSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKPLRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTSILNGEEKGGLPIEAFSKVQELFSGVEWIDSNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDMITKPFVDSTNINFTNPAMVHSSELLSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPPLTSFGSPALPTSSSMSSPLLPPSNLPSANASGELVSNRMAPTVKAIPPPPPPPPFSLSHNKPHVETSFGSDLTTVTMHGRPPPPPPPPPQYPTSNNSITASTHSLSHVPKSSDTPPPPPPPPPFVPKSSSAPPPPPLVPKSFGAPPPPPPPPPVVPKSFGAPPPPPPPPPPPIVPKSFGAPPPPPPPPPIVPKSSIAPPPPPPPPVSKSSNAPPPPPPPPPFLKSSNALPSPPLPPPPPPLLKSSSAPPPPPPPPPSKSSSALPPPPPPPPPKSSSALPPPPPPPPPPSIPKLSGASPPPPLPQSNRGAPAPPPPPPKPPSVELPSHGAKSSRPPPPPPPAKPFNAHPPTSHGATPMPPPPPGSRGSNVPPPPPPSGRGKASLGSTTQGRGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSSINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDREMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVNDLRYHLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISAGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADADKRKTEKEAMKERSSVKAKFECEYQICDSWTSIKLNMRQFCSQRFECSVDLNLTLSLW 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2802147 2813319 + CmPI595203_07g002810.1 Cmu07g0281 419832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0281 1341 SUPERFAMILY Formin homology 2 domain (FH2 domain) 909 1289 - -
Cmu07g0281 1341 PANTHER FORMIN-J 798 1294 IPR051144 -
Cmu07g0281 1341 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 578 593 - -
Cmu07g0281 1341 Pfam Formin Homology 2 Domain 901 1271 IPR015425 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 560 574 - -
Cmu07g0281 1341 ProSiteProfiles Formin homology-2 (FH2) domain profile. 896 1296 IPR015425 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 950 969 - -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 543 558 - -
Cmu07g0281 1341 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 489 901 - -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 594 610 - -
Cmu07g0281 1341 Gene3D - 197 342 - -
Cmu07g0281 1341 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 830 878 - -
Cmu07g0281 1341 SMART PTEN_C2_2 198 338 IPR014020 -
Cmu07g0281 1341 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 489 536 - -
Cmu07g0281 1341 SMART it6_source 515 1335 IPR015425 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 406 431 - -
Cmu07g0281 1341 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cmu07g0281 1341 FunFam Formin-like protein 895 1282 - -
Cmu07g0281 1341 Coils Coil 1177 1204 - -
Cmu07g0281 1341 Gene3D Formin, FH2 domain 898 1282 IPR042201 -
Cmu07g0281 1341 MobiDBLite consensus disorder prediction 611 823 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0281 K28090 - - csv:101217517 1050.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1291 Cmu-Chr6:24087381 Cmu07g0281 Cmu-Chr7:2802147 5.80E-254 dispersed
Cmu06g1648 Cmu-Chr6:27607055 Cmu07g0281 Cmu-Chr7:2802147 2.10E-203 dispersed
Cmu07g0281 Cmu-Chr7:2802147 Cmu05g1671 Cmu-Chr5:26685547 1.40E-258 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g0289 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.7e-190 662.5
Cmu11g0091 . 465 941 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cmu02g1216 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.3e-142 501.9
Cmu03g2293 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.1e-104 377.1
Cmu07g0289 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Cmu02g1216 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.2e-126 448.4
Cmu02g0849 . 283 595 FH2 protein (formin) Gene Family AT4G15200 55.3 3.5e-52 203.0
Cmu05g1539 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cmu05g1539 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 69.2 4.4e-168 589.0
Cmu02g0849 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Cmu07g0289 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.2e-102 369.0
Cmu02g1216 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Cmu07g0289 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cmu11g0091 . 478 923 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Cmu03g2293 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.0e-105 378.6
Cmu05g2548 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.4e-126 448.7
Cmu07g0289 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 1.0e-99 361.7
Cmu02g1216 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cmu02g1216 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cmu05g1539 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.2e-106 382.5
Cmu07g0281 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Cmu07g0281 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 66.0 0.0e+00 1225.7
Cmu06g1291 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Cmu06g1648 . 1383 1704 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cmu04g1244 . 980 1284 FH2 protein (formin) Gene Family AT5G07650 71.1 2.2e-118 423.7
Cmu05g1671 . 1107 1429 FH2 protein (formin) Gene Family AT5G07650 65.0 3.7e-110 396.4
Cmu06g1291 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cmu07g0281 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.5e-108 389.8
Cmu06g1648 . 1310 1697 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cmu04g1244 . 903 1282 FH2 protein (formin) Gene Family AT5G07770 63.8 9.4e-127 451.1
Cmu05g1671 . 1031 1421 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cmu06g1291 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.4e-116 415.6
Cmu07g0281 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Cmu05g1671 . 1023 1429 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cmu06g1291 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Cmu06g1648 . 1310 1704 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cmu07g0281 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.6e-141 497.3
Cmu04g1244 . 873 1282 FH2 protein (formin) Gene Family AT3G32400 58.6 7.6e-130 461.1
Cmu05g1671 . 21 1429 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.7
Cmu06g1291 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Cmu06g1648 . 1311 1704 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cmu04g1244 . 904 1284 FH2 protein (formin) Gene Family AT5G07780 58.2 2.0e-111 399.8
Cmu05g1671 . 1032 1422 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cmu07g0281 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.2e-102 367.9
Cmu06g1291 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Cmu06g1648 . 1 1713 FH2 protein (formin) Gene Family AT5G07740 60.6 0.0e+00 1133.2
Cmu06g1648 . 1382 1711 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cmu04g1244 . 979 1282 FH2 protein (formin) Gene Family AT5G07760 70.5 3.2e-115 413.3
Cmu06g1291 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.3e-110 396.0
Cmu05g1671 . 1106 1438 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cmu07g0281 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32