Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0291 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTTAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCTCCGATCACCAGGACTGAATACGAACCCGAACCCGCGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCTGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTCGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1218 43.6 MTLFSFSFLFVVLLQLSFLFNSLTAKNGDHHHHHLRSPGLNTNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIAAVPAPTPISSPSSFVAPSHL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2924466 2925683 - CmPI595203_07g002910.1 Cmu07g0291 419842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0291 405 MobiDBLite consensus disorder prediction 385 405 - -
Cmu07g0291 405 Gene3D Ribonuclease Inhibitor 51 215 IPR032675 -
Cmu07g0291 405 Gene3D Ribonuclease Inhibitor 216 339 IPR032675 -
Cmu07g0291 405 SUPERFAMILY L domain-like 51 325 - -
Cmu07g0291 405 MobiDBLite consensus disorder prediction 387 405 - -
Cmu07g0291 405 FunFam Leucine-rich repeat extensin-like protein 1 52 213 - -
Cmu07g0291 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 391 IPR051582 -
Cmu07g0291 405 Pfam Leucine Rich Repeat 146 162 IPR001611 GO:0005515(InterPro)
Cmu07g0291 405 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Cmu07g0291 405 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cmu07g0291 405 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Cmu07g0291 405 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0291 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0534 Cmu-Chr5:4587282 Cmu07g0291 Cmu-Chr7:2924466 3.20E-48 dispersed
Cmu07g0291 Cmu-Chr7:2924466 Cmu11g0242 Cmu-Chr11:2917300 5.40E-33 dispersed
Cmu07g0291 Cmu-Chr7:2924466 Cmu06g1076 Cmu-Chr6:20694770 2.40E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0534 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 4.7e-49 193.4
Cmu11g0242 . 73 424 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 6.8e-48 189.5
Cmu07g0291 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.6e-44 176.8
Cmu05g2010 . 64 259 Leucine-rich Repeat extension Gene Families AT1G62440 60.2 2.8e-41 167.5
Cmu06g1076 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.1e-41 166.0
Cmu11g0242 . 38 424 Leucine-rich Repeat extension Gene Families AT4G13340 75.8 5.9e-73 272.7
Cmu06g1076 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.4e-66 251.5
Cmu05g0534 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.9 3.8e-56 216.9
Cmu07g0291 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 9.8e-44 175.6
Cmu05g2010 . 64 253 Leucine-rich Repeat extension Gene Families AT4G13340 66.8 1.3e-43 175.3
Cmu06g0345 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cmu06g0349 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.5e-39 161.0
Cmu06g0344 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Cmu06g0350 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cmu11g0242 . 38 420 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.2e-77 287.7
Cmu06g1076 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.6e-73 271.6
Cmu05g0534 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 67.0 1.4e-54 211.1
Cmu07g0291 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.6e-45 180.3
Cmu05g2010 . 64 253 Leucine-rich Repeat extension Gene Families AT3G24480 65.3 5.8e-45 179.1
Cmu06g0345 . 25 399 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.5e-40 163.7
Cmu06g0350 . 34 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.3 1.8e-38 157.5
Cmu05g0534 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.4 9.0e-72 268.1
Cmu07g0291 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 2.0e-50 197.2
Cmu11g0242 . 85 418 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.7e-41 167.5
Cmu06g1076 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.5e-38 155.2
Cmu06g1076 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 2.9e-40 163.3
Cmu11g0242 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.1e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28