Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g0298 | ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCAATTTCAATTTCCGTCTTCAGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGGTTTCTTAAAGATATTAACGTTCCGCCGAGGAAGCTTGTCGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGACCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCAGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCCCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCACCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGATCTCTCACCTTCTACTCCAAACGTGTCCGTCGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTAGATGGGTTAATGATCTGCTGATGTAA | 1137 | 48.11 | MSSVCAEQQKFQFQFQFPSSASAASSSCSSWFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAATATPRQTIPWIDVSSLNSEDQLQFDLSPSTPNVSVENKGNPDNGWASSSDPDLRWVNDLLM | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2964354 | 2965490 | + | CmPI595203_07g002980.1 | Cmu07g0298 | 419849 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g0298 | 378 | MobiDBLite | consensus disorder prediction | 344 | 366 | - | - | |
| Cmu07g0298 | 378 | MobiDBLite | consensus disorder prediction | 262 | 277 | - | - | |
| Cmu07g0298 | 378 | FunFam | Zinc finger CCCH domain-containing protein 66 | 90 | 158 | - | - | |
| Cmu07g0298 | 378 | MobiDBLite | consensus disorder prediction | 344 | 364 | - | - | |
| Cmu07g0298 | 378 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 159 | IPR000571 | GO:0046872(InterPro) | |
| Cmu07g0298 | 378 | Gene3D | - | 132 | 195 | - | - | |
| Cmu07g0298 | 378 | PANTHER | UNKEMPT FAMILY MEMBER | 59 | 349 | IPR045234 | - | |
| Cmu07g0298 | 378 | SMART | c3hfinal6 | 132 | 158 | IPR000571 | GO:0046872(InterPro) | |
| Cmu07g0298 | 378 | SMART | c3hfinal6 | 167 | 190 | IPR000571 | GO:0046872(InterPro) | |
| Cmu07g0298 | 378 | MobiDBLite | consensus disorder prediction | 247 | 277 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g2183 | Cmu-Chr3:30337099 | Cmu07g0298 | Cmu-Chr7:2964354 | 5.10E-57 | dispersed | |
| Cmu07g0298 | Cmu-Chr7:2964354 | Cmu11g0187 | Cmu-Chr11:2306146 | 3.90E-57 | dispersed | |
| Cmu07g0298 | Cmu-Chr7:2964354 | Cmu05g1809 | Cmu-Chr5:28221820 | 1.00E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6484 | None | None | None | None | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g0298 | K23047 | - | csv:101211149 | 592.808 |