Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0305 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATACGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGACCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTTGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACGGTGTTGCTTGGTGTCGACGATTTGGACATTTTCAAAGGCATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTTCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGAGCTGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGAGCAGGTTATCTCTATCCTTAACATCCTTTGTGCAGATGCAAAAAATGTTGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGTGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2499 42.38 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPDRMIIVANQLPLRAKRREDDNTWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSWIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTFQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNILCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMVEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3018889 3022127 - CmPI595203_07g003050.1 Cmu07g0305 419856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0305 832 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 565 682 - -
Cmu07g0305 832 Pfam Glycosyltransferase family 20 36 519 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu07g0305 832 CDD HAD_TPP 567 806 - -
Cmu07g0305 832 CDD GT20_TPS 36 519 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu07g0305 832 FunFam Alpha,alpha-trehalose-phosphate synthase 290 503 - -
Cmu07g0305 832 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 816 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cmu07g0305 832 Gene3D - 565 666 IPR023214 -
Cmu07g0305 832 Gene3D - 694 826 IPR023214 -
Cmu07g0305 832 Gene3D Glycogen Phosphorylase B; 30 290 - -
Cmu07g0305 832 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 29 288 - -
Cmu07g0305 832 NCBIfam trehalose-phosphatase 564 814 IPR003337 GO:0005992(InterPro)
Cmu07g0305 832 SUPERFAMILY HAD-like 566 814 IPR036412 -
Cmu07g0305 832 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 695 826 - -
Cmu07g0305 832 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 36 522 - -
Cmu07g0305 832 Gene3D Glycogen Phosphorylase B; 291 503 - -
Cmu07g0305 832 Pfam Trehalose-phosphatase 569 803 IPR003337 GO:0005992(InterPro)
Cmu07g0305 832 NCBIfam HAD-IIB family hydrolase 568 772 IPR006379 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0305 K16055 - - csv:101209914 1645.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0305 Cmu-Chr7:3018889 Cmu10g0990 Cmu-Chr10:1896051 0.00E+00 dispersed
Cmu01g2336 Cmu-Chr1:35504962 Cmu07g0305 Cmu-Chr7:3018889 0.00E+00 wgd
Cmu03g1320 Cmu-Chr3:8319886 Cmu07g0305 Cmu-Chr7:3018889 9.40E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu11g1723 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 4.1e-194 675.2
Cmu03g1320 . 96 614 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73