Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0316 ATGGAACTTGAAGACGACTACCGAAGAAAACAGCAACTCCTTCTTCTGGTAATCGTTGTACTTGCTTCTCTCGCTCTCGTTTCTTTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCAATAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGCTGATCTTGAAGATGGAGGTAGTTTTGAAAATGGTAAAGAATTTTCCACTGAGAAAGGTCTCCAATTGTTCACCTTCAAGCAGCTACACTCCGCAACAGGTGGTTTTAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGGCATGTATATCGGGGAGTCCTGAACGATGGGAGAAAGGTTGCGGTTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGATGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGCCTTCATTCACCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAATTACTCGTATACGAGTTCATGGCAAATGGCGGTCTGCAAGAACATCTATACCCTATTAGCAGTTCAAATTCAATCAGCATTAAGTTGGACTGGGAAACACGACTGAGAGTTGCCCTCGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACACGTCTGTCCCCCGGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAAACCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCCGGGGGTCACGTCTCCACTCGAGTTTTAGGGACAAAAGGATATGTTGCCCCTGAGTATGCGCTAACAGGGCATTTAACAACAAAGTCAGATGTCTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACTGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCGAGGCTGACTGATAGGGAGAGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAGTACTCCATGAAAGATGTTGTTCAAGTGGCAGCAATTGCAGCAATGTGTGTTCAACCGGAGGCGGATTACAGGCCGCTGATGGCCGATGTTGTCCAGTCACTGGTTCCGCTTGTGAGAAATTACCAGACTTCAAAGATCGGTAGCAGTTCTAGTTCCAGCGCTACCAAGTCACCTGCAGCGCACGACAATGCTAGTTCGGGAGACTGA 1197 46.53 MELEDDYRRKQQLLLLVIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRADLEDGGSFENGKEFSTEKGLQLFTFKQLHSATGGFSKSNVVGHGSFGHVYRGVLNDGRKVAVKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPISSSNSISIKLDWETRLRVALEAAKGLEYLHEHVCPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTKGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDRERVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYQTSKIGSSSSSSATKSPAAHDNASSGD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3116649 3119576 - CmPI595203_07g003160.1 Cmu07g0316 419867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0316 398 Gene3D Phosphorylase Kinase; domain 1 55 163 - -
Cmu07g0316 398 FunFam Serine/threonine-protein kinase PBS1 57 163 - -
Cmu07g0316 398 SUPERFAMILY Protein kinase-like (PK-like) 66 364 IPR011009 -
Cmu07g0316 398 FunFam Receptor-like serine/threonine-protein kinase ALE2 164 384 - -
Cmu07g0316 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g0316 398 Gene3D Transferase(Phosphotransferase) domain 1 164 388 - -
Cmu07g0316 398 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524(InterPro)
Cmu07g0316 398 PANTHER OS01G0750732 PROTEIN 19 389 IPR050885 -
Cmu07g0316 398 CDD STKc_IRAK 94 367 - -
Cmu07g0316 398 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0316 398 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g0316 398 MobiDBLite consensus disorder prediction 375 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0316 Cmu-Chr7:3116649 Cmu10g1924 Cmu-Chr10:24654674 1.70E-87 dispersed
Cmu09g0319 Cmu-Chr9:3033588 Cmu07g0316 Cmu-Chr7:3116649 3.80E-13 dispersed
Cmu07g0316 Cmu-Chr7:3116649 Cmu03g2269 Cmu-Chr3:31385004 5.20E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75647 PF07714 PK_Tyr_Ser-Thr 1.40E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0316 - - - 0.0