Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0348 ATGCAGCTGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTCGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGCGGCGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTCGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAAGCAAATTCAAATGAATGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTGTCAGCAAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGTTTGAACTTCTCCTAA 792 51.89 MQLNVIMLVNLVVMAMGKFLVVESARLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3379167 3382596 + CmPI595203_07g003480.1 Cmu07g0348 419899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0348 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
Cmu07g0348 263 SUPERFAMILY Barwin-like endoglucanases 27 163 IPR036908 -
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cmu07g0348 263 CDD DPBB_EXPB_N 36 159 - -
Cmu07g0348 263 Gene3D - 161 263 IPR036749 -
Cmu07g0348 263 SMART dpbb_1 72 154 IPR007112 -
Cmu07g0348 263 Pfam Expansin C-terminal domain 166 247 IPR007117 -
Cmu07g0348 263 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Cmu07g0348 263 FunFam Beta-expansin 3 161 263 - -
Cmu07g0348 263 Gene3D - 21 160 IPR036908 -
Cmu07g0348 263 FunFam Expansin B3 22 160 - -
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cmu07g0348 263 Pfam Lytic transglycolase 74 141 IPR009009 -
Cmu07g0348 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Cmu07g0348 263 PANTHER EXPANSIN-B3 13 262 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0348 Cmu-Chr7:3379167 Cmu10g1491 Cmu-Chr10:9923702 2.20E-27 dispersed
Cmu05g0028 Cmu-Chr5:387611 Cmu07g0348 Cmu-Chr7:3379167 5.10E-64 transposed
Cmu09g1207 Cmu-Chr9:13794068 Cmu07g0348 Cmu-Chr7:3379167 4.20E-23 transposed
Cmu02g1741 Cmu-Chr2:31306576 Cmu07g0348 Cmu-Chr7:3379167 7.80E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0348 K20628 - csv:101205324 479.559