Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0369 ATGGCAGATTCTGAGGACATTCAGCCTCTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACAGGCGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAACTTCGTGTTGCTCCCGAGGAGCACCCGGTTCTCCTAACAGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAAACATCCAAGACTAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGACGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAGCCCTCCATGATTGGGATGGAAGCAGCAGGGATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGACTTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCAAGCAGCATGAAGATAAAGGTCGTGGCACCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCAGAATACGACGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 47.35 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3658119 3659687 - CmPI595203_07g003690.1 Cmu07g0369 419920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0369 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmu07g0369 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmu07g0369 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmu07g0369 377 PRINTS Actin signature 51 62 IPR004000 -
Cmu07g0369 377 PRINTS Actin signature 238 254 IPR004000 -
Cmu07g0369 377 PRINTS Actin signature 63 85 IPR004000 -
Cmu07g0369 377 PRINTS Actin signature 142 161 IPR004000 -
Cmu07g0369 377 PRINTS Actin signature 28 37 IPR004000 -
Cmu07g0369 377 PRINTS Actin signature 117 130 IPR004000 -
Cmu07g0369 377 Pfam Actin 5 377 IPR004000 -
Cmu07g0369 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmu07g0369 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cmu07g0369 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cmu07g0369 377 Gene3D - 10 371 - -
Cmu07g0369 377 SMART actin_3 7 377 IPR004000 -
Cmu07g0369 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Cmu07g0369 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmu07g0369 377 Gene3D - 140 340 - -
Cmu07g0369 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmu07g0369 377 FunFam Actin, muscle 182 273 - -
Cmu07g0369 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmu07g0369 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0369 K10355 - - csv:101220611 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0858 Cmu-Chr4:23120473 Cmu07g0369 Cmu-Chr7:3658119 1.80E-216 dispersed
Cmu07g0369 Cmu-Chr7:3658119 Cmu10g2489 Cmu-Chr10:31536873 9.60E-218 dispersed
Cmu07g0369 Cmu-Chr7:3658119 Cmu09g1894 Cmu-Chr9:35047081 2.10E-217 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g295 Blo04g00108 . . . . . . . Cmo04g00222 Cmo04g01263 Cma04g01189 Cma04g00220 Car04g01093 . . . Cpe01g00187 . . . . . . . Cla07g00303 Cam07g0320 Cec07g0364 Cco07g0325 Clacu07g0312 Cmu07g0369 Cre07g0679 . . . . Lsi03g00412 . Chy10g00547 Cme10g00888 . . . Bda15g00357 . . . . . . Cmo15g00397 . Cma15g00386 . Car15g00367 Cpe01g01096 . . . . . . . . . . . . . . . Lsi04g00880 Csa05g00706 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.0e-214 740.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.2e-213 736.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.8e-211 729.6
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.5e-214 740.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.5e-215 743.8
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 719.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.7e-210 726.1
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT2G19760 72.5 3.7e-55 211.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.3e-54 207.2
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.4e-52 199.9
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Cmu11g0198 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29340 73.9 3.1e-57 218.0
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.1e-52 200.7
Cmu11g0198 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.3e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276