Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g0379 | ATGGCCGCCCTTCCTCTTACTCTTCTCCTCATTCTCCTTTCGCTTCTTGCCGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA | 774 | 54.39 | MAALPLTLLLILLSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3820281 | 3822344 | - | CmPI595203_07g003790.1 | Cmu07g0379 | 419930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g0379 | 257 | SUPERFAMILY | PHL pollen allergen | 160 | 252 | IPR036749 | - | |
| Cmu07g0379 | 257 | Gene3D | - | 163 | 255 | IPR036749 | - | |
| Cmu07g0379 | 257 | FunFam | Expansin | 163 | 255 | - | - | |
| Cmu07g0379 | 257 | FunFam | Expansin | 20 | 159 | - | - | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 121 | 138 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 102 | 112 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 88 | 99 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 138 | 151 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 238 | 254 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 61 | 75 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 162 | 174 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 209 | 230 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin signature | 174 | 195 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | PANTHER | EXPANSIN-A15 | 9 | 255 | IPR002963 | GO:0009664(InterPro) | |
| Cmu07g0379 | 257 | Pfam | Expansin C-terminal domain | 164 | 241 | IPR007117 | - | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 146 | 162 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 238 | 252 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 70 | 88 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 30 | 45 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 200 | 214 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | PRINTS | Expansin/Lol pI family signature | 48 | 66 | IPR007118 | GO:0005576(InterPro) | |
| Cmu07g0379 | 257 | Pfam | Lytic transglycolase | 66 | 153 | IPR009009 | - | |
| Cmu07g0379 | 257 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 173 | 252 | IPR007117 | - | |
| Cmu07g0379 | 257 | Gene3D | - | 19 | 159 | IPR036908 | - | |
| Cmu07g0379 | 257 | SMART | dpbb_1 | 66 | 153 | IPR007112 | - | |
| Cmu07g0379 | 257 | SUPERFAMILY | Barwin-like endoglucanases | 30 | 181 | IPR036908 | - | |
| Cmu07g0379 | 257 | CDD | DPBB_EXPA_N | 30 | 158 | - | - | |
| Cmu07g0379 | 257 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 49 | 163 | IPR007112 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu01g0316 | Cmu-Chr1:3265472 | Cmu07g0379 | Cmu-Chr7:3820281 | 3.10E-74 | dispersed | |
| Cmu04g0987 | Cmu-Chr4:24399327 | Cmu07g0379 | Cmu-Chr7:3820281 | 1.10E-91 | dispersed | |
| Cmu07g0379 | Cmu-Chr7:3820281 | Cmu07g0561 | Cmu-Chr7:6844854 | 8.30E-104 | dispersed | |
| Cmu02g2002 | Cmu-Chr2:33783402 | Cmu07g0379 | Cmu-Chr7:3820281 | 2.40E-135 | wgd | |
| Cmu03g0763 | Cmu-Chr3:1825738 | Cmu07g0379 | Cmu-Chr7:3820281 | 4.60E-134 | wgd | |
| Cmu04g0854 | Cmu-Chr4:23047064 | Cmu07g0379 | Cmu-Chr7:3820281 | 1.70E-136 | wgd | |
| Cmu07g0379 | Cmu-Chr7:3820281 | Cmu09g1886 | Cmu-Chr9:34982194 | 1.10E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g0379 | - | - | - | 0.0 |