Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g0454 | ATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCCGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATAAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGAGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCTGGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCACTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAACGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTGA | 1017 | 43.76 | MASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIHNMETTERNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSSNTSGSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4808274 | 4810967 | + | CmPI595203_07g004540.1 | Cmu07g0454 | 420005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g0454 | 338 | Pfam | SNARE domain | 284 | 335 | IPR000727 | - | |
Cmu07g0454 | 338 | SUPERFAMILY | t-snare proteins | 49 | 302 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cmu07g0454 | 338 | SMART | tSNARE_6 | 242 | 309 | IPR000727 | - | |
Cmu07g0454 | 338 | CDD | SNARE_syntaxin5 | 250 | 335 | - | - | |
Cmu07g0454 | 338 | Gene3D | - | 48 | 302 | - | - | |
Cmu07g0454 | 338 | MobiDBLite | consensus disorder prediction | 30 | 47 | - | - | |
Cmu07g0454 | 338 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 247 | 309 | IPR000727 | - | |
Cmu07g0454 | 338 | PANTHER | SYNTAXIN | 55 | 329 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cmu07g0454 | 338 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 21 | IPR021538 | - | |
Cmu07g0454 | 338 | ProSitePatterns | Syntaxin / epimorphin family signature. | 253 | 292 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cmu07g0454 | 338 | MobiDBLite | consensus disorder prediction | 173 | 215 | - | - | |
Cmu07g0454 | 338 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g0454 | Cmu-Chr7:4808274 | Cmu08g1223 | Cmu-Chr8:24616114 | 3.00E-61 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g0454 | K08490 | - | csv:101213786 | 585.104 |